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Categories
collections
(4)
data visualization
(75)
network generation
(60)
network analysis
(59)
graph analysis
(58)
online data import
(47)
automation
(42)
integrated analysis
(38)
clustering
(37)
systems biology
(33)
utility
(31)
visualization
(29)
enrichment analysis
(29)
data integration
(27)
layout
(21)
annotation
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core app
(20)
ontology analysis
(18)
import
(18)
pathway database
(17)
network comparison
(17)
local data import
(16)
gene expression
(16)
functional analysis
(16)
interaction database
(14)
scripting
(13)
PPI-network
(13)
Network structure
(12)
network dynamics
(12)
GO annotation
(12)
regulatory networks
(11)
network inference
(10)
Topology
(9)
network manipulation
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heat map visualization
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export
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pathway
(8)
networks
(8)
gene regulation
(8)
functional module detection
(8)
disease
(8)
database
(8)
cancer data analysis
(8)
attribute generation
(8)
animation
(8)
linked data
(7)
ID mapping
(7)
simulation
(6)
Random walk with restart algorithm
(6)
network partitioning
(6)
network learning
(6)
molecular structure
(6)
microarrays
(6)
grouping
(6)
gene-disease association
(6)
Connection sub-graph discovery
(6)
centrality analysis
(6)
social network analysis
(5)
shortest paths
(5)
sequence similarity
(5)
R
(5)
Protein complex
(5)
Pathway finding
(5)
network alignment
(5)
Gene prioritization
(5)
data manipulation
(5)
structural biology
(4)
SPARQL
(4)
signaling
(4)
literature mining
(4)
kegg
(4)
JavaScript
(4)
gene function prediction
(4)
gene co-expression
(4)
disease-disease association
(4)
cluster visualization
(4)
3d visualization
(4)
variant analysis
(3)
set visualization
(3)
set analysis
(3)
search
(3)
SBML
(3)
protein dynamics
(3)
pathway reconstruction
(3)
network repository
(3)
inference
(3)
genome visualization
(3)
flux analysis
(3)
bayesian networks
(3)
Core app
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Biomart Web Service Client
Core App: Provides support for Biomart web service in Cytoscape
Biomart Web Service Client
Core App: Provides support for Biomart web service in Cytoscape
(0) 6272 downloads
Command Line Implementation
Core App: Provides Cytoscape's Command Line Dialog tool
Command Line Implementation
Core App: Provides Cytoscape's Command Line Dialog tool
(0) 4773 downloads
Core Apps
Core App: Set of apps packaged with the regular Cytoscape distribution. You do not need to install these separately.
Core Apps
Core App: Set of apps packaged with the regular Cytoscape distribution. You do not need to install these separately.
(0) 1837 downloads
cyBrowser
Core App: Add HTML Browser to Cytoscape
cyBrowser
Core App: Add HTML Browser to Cytoscape
(0) 17124 downloads
CyNDEx-2
Core App: CyNDEx-2 is a user-friendly app for browsing, importing, and exporting networks to an NDEx server.
CyNDEx-2
Core App: CyNDEx-2 is a user-friendly app for browsing, importing, and exporting networks to an NDEx server.
(4) 21313 downloads
Diffusion
Expand node selection using network propagation algorithms
Diffusion
Expand node selection using network propagation algorithms
(35) 15911 downloads
JSON Support
Core App: Provides support for reading/writing Cytoscape.js JSON files in Cytoscape
JSON Support
Core App: Provides support for reading/writing Cytoscape.js JSON files in Cytoscape
(0) 9071 downloads
Network Merge
Core App: Provides Cytoscape's Network Merge tool
Network Merge
Core App: Provides Cytoscape's Network Merge tool
(1) 19569 downloads
PSICQUIC Web Service Client
Core App: Provides support for PSICQUIC web service in Cytoscape
PSICQUIC Web Service Client
Core App: Provides support for PSICQUIC web service in Cytoscape
(0) 4405 downloads
SBML Reader
Core App: Provides support for reading SBML files in Cytoscape
SBML Reader
Core App: Provides support for reading SBML files in Cytoscape
(0) 5761 downloads
BioPAX Reader
Core App: Provides support for reading BioPAX files in Cytoscape
BioPAX Reader
Core App: Provides support for reading BioPAX files in Cytoscape
(41) 9673 downloads
copycatLayout
Clone a network view layout by mapping node column values
copycatLayout
Clone a network view layout by mapping node column values
(1) 5154 downloads
CX Support
Core App: CX JSON file reader and writer
CX Support
Core App: CX JSON file reader and writer
(3) 28078 downloads
CyCL
Core App: Provides OpenCL support for Cytoscape
CyCL
Core App: Provides OpenCL support for Cytoscape
(0) 5494 downloads
cyREST
Core App: Language-agnostic RESTful API
cyREST
Core App: Language-agnostic RESTful API
(4) 86254 downloads
ID Mapper
A plug-in to the BridgeDB service to provide identifier lookup. Right-click on a column header to use the "Map Column" command.
ID Mapper
A plug-in to the BridgeDB service to provide identifier lookup. Right-click on a column header to use the "Map Column" command.
(1) 9686 downloads
NetworkAnalyzer
Core App: Computes basic properties of whole network (degree distribution, clustering coefficients, centrality, etc.)
NetworkAnalyzer
Core App: Computes basic properties of whole network (degree distribution, clustering coefficients, centrality, etc.)
(10) 14035 downloads
OpenCL Prefuse Layout
Core App: Provides faster OpenCL-based version of Cytoscape Prefuse layout
OpenCL Prefuse Layout
Core App: Provides faster OpenCL-based version of Cytoscape Prefuse layout
(0) 4677 downloads
PSI-MI Reader
Core App: Provides support for reading PSI-MI files in Cytoscape
PSI-MI Reader
Core App: Provides support for reading PSI-MI files in Cytoscape
(0) 5398 downloads
Welcome Screen
Core App: Provides Cytoscape welcome screen
Welcome Screen
Core App: Provides Cytoscape welcome screen
(0) 5903 downloads
Unsupported Plugins for Cytoscape 2.x
