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collections
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data visualization
(75)
network generation
(59)
network analysis
(56)
graph analysis
(56)
online data import
(46)
automation
(43)
integrated analysis
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clustering
(36)
systems biology
(32)
utility
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enrichment analysis
(29)
visualization
(28)
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(28)
layout
(21)
core app
(21)
annotation
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ontology analysis
(18)
pathway database
(17)
network comparison
(17)
local data import
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import
(17)
gene expression
(16)
functional analysis
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scripting
(13)
interaction database
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PPI-network
(12)
GO annotation
(12)
regulatory networks
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Network structure
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network dynamics
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network inference
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Topology
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heat map visualization
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export
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network manipulation
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gene regulation
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functional module detection
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disease
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cancer data analysis
(8)
attribute generation
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animation
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networks
(7)
linked data
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ID mapping
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gene-disease association
(7)
database
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centrality analysis
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simulation
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Random walk with restart algorithm
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pathway
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network partitioning
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network learning
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molecular structure
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microarrays
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grouping
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social network analysis
(5)
R
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Protein complex
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Pathway finding
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literature mining
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Gene prioritization
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data manipulation
(5)
Connection sub-graph discovery
(5)
structural biology
(4)
SPARQL
(4)
signaling
(4)
set analysis
(4)
sequence similarity
(4)
network alignment
(4)
kegg
(4)
JavaScript
(4)
gene function prediction
(4)
gene co-expression
(4)
disease-disease association
(4)
cluster visualization
(4)
variant analysis
(3)
shortest paths
(3)
set visualization
(3)
search
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SBML
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network repository
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inference
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genome visualization
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bayesian networks
(3)
Core app
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Analyzer
Calculate network, node, and edge statistics for any connected network
Analyzer
Calculate network, node, and edge statistics for any connected network
(0) 2555 downloads
BioPAX Reader
Core App: Provides support for reading BioPAX files in Cytoscape
BioPAX Reader
Core App: Provides support for reading BioPAX files in Cytoscape
(41) 9068 downloads
copycatLayout
Clone a network view layout by mapping node column values
copycatLayout
Clone a network view layout by mapping node column values
(1) 4531 downloads
CX Support
Core App: CX JSON file reader and writer
CX Support
Core App: CX JSON file reader and writer
(3) 21054 downloads
CyCL
Core App: Provides OpenCL support for Cytoscape
CyCL
Core App: Provides OpenCL support for Cytoscape
(0) 5045 downloads
cyREST
Core App: Language-agnostic RESTful API
cyREST
Core App: Language-agnostic RESTful API
(4) 68321 downloads
ID Mapper
A plug-in to the BridgeDB service to provide identifier lookup. Right-click on a column header to use the "Map Column" command.
ID Mapper
A plug-in to the BridgeDB service to provide identifier lookup. Right-click on a column header to use the "Map Column" command.
(1) 8449 downloads
NetworkAnalyzer
Core App: Computes basic properties of whole network (degree distribution, clustering coefficients, centrality, etc.)
NetworkAnalyzer
Core App: Computes basic properties of whole network (degree distribution, clustering coefficients, centrality, etc.)
(10) 11821 downloads
OpenCL Prefuse Layout
Core App: Provides faster OpenCL-based version of Cytoscape Prefuse layout
OpenCL Prefuse Layout
Core App: Provides faster OpenCL-based version of Cytoscape Prefuse layout
(0) 4236 downloads
PSI-MI Reader
Core App: Provides support for reading PSI-MI files in Cytoscape
PSI-MI Reader
Core App: Provides support for reading PSI-MI files in Cytoscape
(0) 5018 downloads
Welcome Screen
Core App: Provides Cytoscape welcome screen
Welcome Screen
Core App: Provides Cytoscape welcome screen
(0) 5248 downloads
Biomart Web Service Client
Core App: Provides support for Biomart web service in Cytoscape
Biomart Web Service Client
Core App: Provides support for Biomart web service in Cytoscape
(0) 5794 downloads
Command Line Implementation
Core App: Provides Cytoscape's Command Line Dialog tool
Command Line Implementation
Core App: Provides Cytoscape's Command Line Dialog tool
(0) 4053 downloads
Core Apps
Core App: Set of apps packaged with the regular Cytoscape distribution. You do not need to install these separately.
Core Apps
Core App: Set of apps packaged with the regular Cytoscape distribution. You do not need to install these separately.
(0) 1574 downloads
cyBrowser
Core App: Add HTML Browser to Cytoscape
cyBrowser
Core App: Add HTML Browser to Cytoscape
(0) 11966 downloads
CyNDEx-2
Core App: CyNDEx-2 is a user-friendly app for browsing, importing, and exporting networks to an NDEx server.
CyNDEx-2
Core App: CyNDEx-2 is a user-friendly app for browsing, importing, and exporting networks to an NDEx server.
(4) 14210 downloads
Diffusion
Expand node selection using network propagation algorithms
Diffusion
Expand node selection using network propagation algorithms
(35) 10656 downloads
JSON Support
Core App: Provides support for reading/writing Cytoscape.js JSON files in Cytoscape
JSON Support
Core App: Provides support for reading/writing Cytoscape.js JSON files in Cytoscape
(0) 8321 downloads
Network Merge
Core App: Provides Cytoscape's Network Merge tool
Network Merge
Core App: Provides Cytoscape's Network Merge tool
(1) 14802 downloads
PSICQUIC Web Service Client
Core App: Provides support for PSICQUIC web service in Cytoscape
PSICQUIC Web Service Client
Core App: Provides support for PSICQUIC web service in Cytoscape
(0) 3983 downloads
SBML Reader
Core App: Provides support for reading SBML files in Cytoscape
SBML Reader
Core App: Provides support for reading SBML files in Cytoscape
(0) 5320 downloads
Unsupported Plugins for Cytoscape 2.x
