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data visualization
(78)
network analysis
(64)
network generation
(63)
graph analysis
(60)
automation
(49)
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(39)
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systems biology
(33)
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gene expression
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export
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pathway
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networks
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disease
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cancer data analysis
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gene regulation
(8)
database
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animation
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molecular structure
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linked data
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grouping
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gene-disease association
(7)
Connection sub-graph discovery
(7)
centrality analysis
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3d visualization
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simulation
(6)
Random walk with restart algorithm
(6)
network learning
(6)
microarrays
(6)
gene co-expression
(6)
cluster visualization
(6)
social network analysis
(5)
shortest paths
(5)
sequence similarity
(5)
SBML
(5)
R
(5)
Protein complex
(5)
Pathway finding
(5)
network alignment
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Gene prioritization
(5)
data manipulation
(5)
structural biology
(4)
SPARQL
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signaling
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search
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literature mining
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kegg
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JavaScript
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gene function prediction
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flux analysis
(4)
bayesian networks
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variant analysis
(3)
subnetwork extraction
(3)
set visualization
(3)
set analysis
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python
(3)
protein dynamics
(3)
post-translational modification
(3)
pathway reconstruction
(3)
Pathway analysis
(3)
non-coding RNA
(3)
network repository
(3)
inference
(3)
graph clustering
(3)
genome visualization
(3)
drug repurposing
(3)
disease module
(3)
disease-disease association
(3)
Cytoscape
(3)
Community detection
(3)
Cancer
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Boolean Network
(3)
Newest Releases
Get Started with the App Store »
PSICQUIC
PSICQUIC
(0) 2 installs
H App
Test App for Cytoscape Web
H App
Test App for Cytoscape Web
(0) 20 installs
cy3sbml
cy3sbml visualizes SBML models (Systems Biology Markup Language)
cy3sbml
cy3sbml visualizes SBML models (Systems Biology Markup Language)
(3) 47221 downloads
Multiscale Pathway Viewer
Multiscale Pathway Viewer
(0) 4 installs
Open URL
Test cytoscape web app that loads ndexbio.org in a new tab
Open URL
Test cytoscape web app that loads ndexbio.org in a new tab
(0) 22 installs
CyChat
Chat with Cytoscape in natural language and get a reproducible Jupyter notebook
CyChat
Chat with Cytoscape in natural language and get a reproducible Jupyter notebook
(12) 421 downloads
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ClueGO
Creates and visualizes a functionally grouped network of terms/pathways
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Creates and visualizes a functionally grouped network of terms/pathways
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Highly sophisticated algorithms for arranging networks.
yFiles Layout Algorithms
Highly sophisticated algorithms for arranging networks.
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CluePedia
CluePedia: A ClueGO plugin for pathway insights using integrated experimental and in silico data
CluePedia
CluePedia: A ClueGO plugin for pathway insights using integrated experimental and in silico data
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stringApp
Import and augment Cytoscape networks from STRING
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MCODE
Clusters a given network based on topology to find densely connected regions.
MCODE
Clusters a given network based on topology to find densely connected regions.
(32) 267552 downloads
cytoHubba
Predicts and explores important nodes and subnetworks in a given network by several topological algorithms.
cytoHubba
Predicts and explores important nodes and subnetworks in a given network by several topological algorithms.
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