Summarizes functions of interacting clusters as logos, where sizes of logo represents frequencies of these functions.

Flexible network extension app

Launching arbitrary external apps (such as viewers) for nodes/edges

Finds clusters and visually annotates them with labels and groups.

An open-source application that models the effects of small binding molecules in pathways in Systems Biology Graphical Notation

Synchronous Visualizer

Creates and visualizes a functionally grouped network of terms/pathways

CluePedia: A ClueGO plugin for pathway insights using integrated experimental and in silico data

Multi-algorithm clustering app for Cytoscape

Calculates overrepresented GO terms in the network and display them as a network of significant GO terms.

Imports interaction networks from public databases from a list of genes with their annotations and putative functions.

Clusters a given network based on topology to find densely connected regions.