Simple 3D Network Renderer App

Core App: CX JSON file reader and writer

Core App: Add HTML Browser to Cytoscape

Heuristic algorithms for weighted (k) cluster-editing. Works with Cytoscape 3.7.

Elucidating functional networks of proteins

a tool for unifying biomedical ontology-based semantic similarity calculation, enrichment analysis and visualization

Creates and visualizes a functionally grouped network of terms/pathways

CluePedia: A ClueGO plugin for pathway insights using integrated experimental and in silico data

Import and augment Cytoscape networks from STRING

Calculates overrepresented GO terms in the network and display them as a network of significant GO terms.

Imports interaction networks from public databases from a list of genes with their annotations and putative functions.

Clusters a given network based on topology to find densely connected regions.