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Categories
data visualization
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network analysis
(63)
network generation
(61)
graph analysis
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automation
(48)
online data import
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clustering
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integrated analysis
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utility
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systems biology
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enrichment analysis
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visualization
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data integration
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core app
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annotation
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layout
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pathway database
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ontology analysis
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import
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gene expression
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network comparison
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local data import
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functional analysis
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PPI-network
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interaction database
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Network structure
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scripting
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network dynamics
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regulatory networks
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GO annotation
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Topology
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network inference
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heat map visualization
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export
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pathway
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networks
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network manipulation
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functional module detection
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disease
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cancer data analysis
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network partitioning
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gene regulation
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database
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attribute generation
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animation
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molecular structure
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linked data
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ID mapping
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grouping
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gene-disease association
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Connection sub-graph discovery
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centrality analysis
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3d visualization
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simulation
(6)
Random walk with restart algorithm
(6)
network learning
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microarrays
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gene co-expression
(6)
cluster visualization
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social network analysis
(5)
shortest paths
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sequence similarity
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SBML
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R
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Protein complex
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Pathway finding
(5)
network alignment
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Gene prioritization
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data manipulation
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structural biology
(4)
SPARQL
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signaling
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search
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literature mining
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kegg
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JavaScript
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gene function prediction
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flux analysis
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bayesian networks
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variant analysis
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subnetwork extraction
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set visualization
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set analysis
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python
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protein dynamics
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post-translational modification
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pathway reconstruction
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Pathway analysis
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network repository
(3)
inference
(3)
graph clustering
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genome visualization
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drug repurposing
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disease module
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disease-disease association
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Community detection
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Cancer
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Boolean Network
(3)
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CX Support
Core App: CX JSON file reader and writer
CX Support
Core App: CX JSON file reader and writer
(3) 79505 downloads
D3.js Exporter
Network and Table Data Exporter for D3.js
D3.js Exporter
Network and Table Data Exporter for D3.js
(1) 12618 downloads
JGF App
Import / Export OpenBEL Networks. JSON Graph Format Network App handles more restrictive BEL schema.
JGF App
Import / Export OpenBEL Networks. JSON Graph Format Network App handles more restrictive BEL schema.
(1) 7084 downloads
CytoDiVR
Dive into your Cytoscape networks in Virtual Reality
CytoDiVR
Dive into your Cytoscape networks in Virtual Reality
(0) 137 downloads
dot-app
Import/export of Graphviz files in Cytoscape
dot-app
Import/export of Graphviz files in Cytoscape
(31) 15218 downloads
Legend Creator
A way to add legends of discrete and continuous mappings to your graph
Legend Creator
A way to add legends of discrete and continuous mappings to your graph
(5) 25872 downloads
Unsupported Plugins for Cytoscape 2.x
BiNoM
Import/Export of System Biology file formats (BioPAX level 3, SBML, CellDesigner). Analysis and manipulation of biological networks.
BiNoM
Import/Export of System Biology file formats (BioPAX level 3, SBML, CellDesigner). Analysis and manipulation of biological networks.
(17)
SessionForWeb
Saves Cytoscape session in Web format.
SessionForWeb
Saves Cytoscape session in Web format.
(0)
GPML-Plugin
Enables import of GPML file via import menu.
GPML-Plugin
Enables import of GPML file via import menu.
(10)
SubnetworkCreator
Create subnetworks for disconnected graphs.
SubnetworkCreator
Create subnetworks for disconnected graphs.
(2)
