• Submit an App
    • Submit an App
    • Guide to 3.0 App Development
  • Sign In

All Apps

Platforms

  • Desktop Apps
  • Service Apps
  • Web Apps

Categories

  • data visualization (78)
  • network analysis (64)
  • network generation (63)
  • graph analysis (60)
  • automation (49)
  • online data import (47)
  • clustering (39)
  • integrated analysis (37)
  • systems biology (33)
  • visualization (32)
  • utility (32)
  • enrichment analysis (32)
  • data integration (27)
  • core app (25)
  • annotation (24)
  • layout (22)
  • pathway database (19)
  • import (19)
  • ontology analysis (18)
  • gene expression (18)
  • PPI-network (16)
  • network comparison (16)
  • local data import (16)
  • interaction database (16)
  • functional analysis (16)
  • Network structure (14)
  • scripting (13)
  • regulatory networks (13)
  • network dynamics (13)
  • GO annotation (12)
  • Topology (10)
  • pathway (10)
  • network inference (10)
  • heat map visualization (10)
  • export (10)
  • networks (9)
  • network manipulation (9)
  • functional module detection (9)
  • disease (9)
  • database (9)
  • cancer data analysis (9)
  • network partitioning (8)
  • gene regulation (8)
  • attribute generation (8)
  • animation (8)
  • molecular structure (7)
  • linked data (7)
  • ID mapping (7)
  • grouping (7)
  • gene-disease association (7)
  • Connection sub-graph discovery (7)
  • centrality analysis (7)
  • 3d visualization (7)
  • simulation (6)
  • Random walk with restart algorithm (6)
  • network learning (6)
  • microarrays (6)
  • gene co-expression (6)
  • cluster visualization (6)
  • social network analysis (5)
  • shortest paths (5)
  • sequence similarity (5)
  • SBML (5)
  • R (5)
  • Protein complex (5)
  • Pathway finding (5)
  • network alignment (5)
  • Gene prioritization (5)
  • data manipulation (5)
  • structural biology (4)
  • SPARQL (4)
  • signaling (4)
  • search (4)
  • Pathway analysis (4)
  • literature mining (4)
  • kegg (4)
  • JavaScript (4)
  • gene function prediction (4)
  • flux analysis (4)
  • bayesian networks (4)
  • variant analysis (3)
  • subnetwork extraction (3)
  • set visualization (3)
  • set analysis (3)
  • python (3)
  • protein dynamics (3)
  • post-translational modification (3)
  • pathway reconstruction (3)
  • non-coding RNA (3)
  • network repository (3)
  • inference (3)
  • graph clustering (3)
  • genome visualization (3)
  • drug repurposing (3)
  • disease module (3)
  • disease-disease association (3)
  • Cytoscape (3)
  • Community detection (3)
  • Cancer (3)
  • Boolean Network (3)

Database

Search for posts about database →

Ask a question about database →

BioGateway Cytoscape Plugin
An explorative network building plugin that works with the BioGateway triple store
BioGateway Cytoscape Plugin
An explorative network building plugin that works with the BioGateway triple store
(8)   16038 downloads
Cytoscape Neo4j Plugin
Cytoscape Neo4j Plugin
(5)   16046 downloads
DisGeNET-app
Query, analyze, and visualize DISGENET data
DisGeNET-app
Query, analyze, and visualize DISGENET data
(9)   96272 downloads
PSICQUIC Web Service Client
Core App: Provides support for PSICQUIC web service in Cytoscape
PSICQUIC Web Service Client
Core App: Provides support for PSICQUIC web service in Cytoscape
(1)   12628 downloads
WikiDataScape
A WikiData explorer for Cytoscape
WikiDataScape
A WikiData explorer for Cytoscape
(3)   12690 downloads
CyNDEx-2
Core App: CyNDEx-2 is a user-friendly app for browsing, importing, and exporting networks to an NDEx server.
CyNDEx-2
Core App: CyNDEx-2 is a user-friendly app for browsing, importing, and exporting networks to an NDEx server.
(4)   80206 downloads
Cytoscape RedisGraph Plugin
Cytoscape RedisGraph Plugin
(1)   5161 downloads
OmniPath
OmniPath: literature curated human signaling pathways
OmniPath
OmniPath: literature curated human signaling pathways
(17)   21833 downloads
Vital AI Graph Visualization
Use Vital AI software to connect to Databases, Servers, and Hadoop/Spark
Vital AI Graph Visualization
Use Vital AI software to connect to Databases, Servers, and Hadoop/Spark
(7)   13322 downloads

About • Contact Us Wall of Apps