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Categories
data visualization
(78)
network analysis
(64)
network generation
(62)
graph analysis
(60)
automation
(48)
online data import
(47)
clustering
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integrated analysis
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systems biology
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utility
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(27)
core app
(25)
annotation
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layout
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import
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gene expression
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network comparison
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local data import
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PPI-network
(15)
interaction database
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Network structure
(14)
scripting
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regulatory networks
(13)
network dynamics
(13)
GO annotation
(12)
Topology
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network inference
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heat map visualization
(10)
export
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pathway
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networks
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network manipulation
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disease
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cancer data analysis
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network partitioning
(8)
gene regulation
(8)
database
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attribute generation
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animation
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molecular structure
(7)
linked data
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ID mapping
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grouping
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gene-disease association
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Connection sub-graph discovery
(7)
centrality analysis
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3d visualization
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simulation
(6)
Random walk with restart algorithm
(6)
network learning
(6)
microarrays
(6)
gene co-expression
(6)
cluster visualization
(6)
social network analysis
(5)
shortest paths
(5)
sequence similarity
(5)
SBML
(5)
R
(5)
Protein complex
(5)
Pathway finding
(5)
network alignment
(5)
Gene prioritization
(5)
data manipulation
(5)
structural biology
(4)
SPARQL
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signaling
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search
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literature mining
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kegg
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JavaScript
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gene function prediction
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flux analysis
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bayesian networks
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variant analysis
(3)
subnetwork extraction
(3)
set visualization
(3)
set analysis
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python
(3)
protein dynamics
(3)
post-translational modification
(3)
pathway reconstruction
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Pathway analysis
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non-coding RNA
(3)
network repository
(3)
inference
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graph clustering
(3)
genome visualization
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drug repurposing
(3)
disease module
(3)
disease-disease association
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Community detection
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Cancer
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Boolean Network
(3)
Attribute generation
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cdtReader
Read Cluster 3 output files into Cytoscape
cdtReader
Read Cluster 3 output files into Cytoscape
(0) 4784 downloads
FileWatcher
An App to Link Networks with Excel Files
FileWatcher
An App to Link Networks with Excel Files
(0) 3737 downloads
structureViz2
App to visualize macromolecular structures in a network context
structureViz2
App to visualize macromolecular structures in a network context
(4) 14755 downloads
Cyni Toolbox
Cytoscape Network Inference Toolbox puts together several tools that allow infering networks from bio data (For Cytoscape 3.1+)
Cyni Toolbox
Cytoscape Network Inference Toolbox puts together several tools that allow infering networks from bio data (For Cytoscape 3.1+)
(25) 21028 downloads
MCDS
Approximates the minimum connected dominating set (MCDS) of directed networks.
MCDS
Approximates the minimum connected dominating set (MCDS) of directed networks.
(14) 5763 downloads
Unsupported Plugins for Cytoscape 2.x
CySBML
Cytoscape Plugin for SBML
CySBML
Cytoscape Plugin for SBML
(7)
edgeLengthPlugin
Calculate edge length in the main network view window, and stores them as edge attributes "length".
edgeLengthPlugin
Calculate edge length in the main network view window, and stores them as edge attributes "length".
(0)
DomainGraph
Visualizes domain-domain interactions which connect pairs of interacting proteins.
DomainGraph
Visualizes domain-domain interactions which connect pairs of interacting proteins.
(7)
