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Categories
data visualization
(78)
network analysis
(64)
network generation
(62)
graph analysis
(60)
automation
(48)
online data import
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clustering
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integrated analysis
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systems biology
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utility
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data integration
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core app
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annotation
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layout
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ontology analysis
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import
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gene expression
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local data import
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PPI-network
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interaction database
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Network structure
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scripting
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regulatory networks
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network dynamics
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GO annotation
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Topology
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network inference
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heat map visualization
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export
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pathway
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networks
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network manipulation
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disease
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cancer data analysis
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network partitioning
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gene regulation
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database
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attribute generation
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animation
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molecular structure
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linked data
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ID mapping
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grouping
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gene-disease association
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Connection sub-graph discovery
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centrality analysis
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3d visualization
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simulation
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Random walk with restart algorithm
(6)
network learning
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microarrays
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gene co-expression
(6)
cluster visualization
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social network analysis
(5)
shortest paths
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sequence similarity
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SBML
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R
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Protein complex
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Pathway finding
(5)
network alignment
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Gene prioritization
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data manipulation
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structural biology
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SPARQL
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signaling
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search
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literature mining
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kegg
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JavaScript
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gene function prediction
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flux analysis
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bayesian networks
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variant analysis
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subnetwork extraction
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set visualization
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set analysis
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python
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protein dynamics
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post-translational modification
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pathway reconstruction
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Pathway analysis
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non-coding RNA
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network repository
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inference
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graph clustering
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genome visualization
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drug repurposing
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disease module
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disease-disease association
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Community detection
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Cancer
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Boolean Network
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Heat map visualization
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ClueGO
Creates and visualizes a functionally grouped network of terms/pathways
ClueGO
Creates and visualizes a functionally grouped network of terms/pathways
(313) 354343 downloads
cyPlot
A utility to display data plots
cyPlot
A utility to display data plots
(1) 28456 downloads
IDARE
Data Visualisation for Multi-Omics data
IDARE
Data Visualisation for Multi-Omics data
(0) 2519 downloads
clusterMaker2
Multi-algorithm clustering app for Cytoscape
clusterMaker2
Multi-algorithm clustering app for Cytoscape
(28) 152743 downloads
DyNet
Compare two or more networks and identify the most 'rewired' nodes.
DyNet
Compare two or more networks and identify the most 'rewired' nodes.
(7) 12816 downloads
RenoDoI
A visual analytics approach for integrated data-knowledge networks.
RenoDoI
A visual analytics approach for integrated data-knowledge networks.
(1) 3902 downloads
Unsupported Plugins for Cytoscape 2.x
clusterMaker
Clusters densely connected nodes and node attributes in a given network.
clusterMaker
Clusters densely connected nodes and node attributes in a given network.
(22)
MultiColoredNodes
Visualize several node attributes simultaneously using pie charts.
MultiColoredNodes
Visualize several node attributes simultaneously using pie charts.
(11)
IDARE [idare]
Multiomics Visualisation and Network detangling
IDARE [idare]
Multiomics Visualisation and Network detangling
(1)
VistaClaraPlugin
Provides effective visualization and analysis platform to analyse expression data on a given network.
VistaClaraPlugin
Provides effective visualization and analysis platform to analyse expression data on a given network.
(5)
