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data visualization
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network analysis
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export
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Random walk with restart algorithm
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microarrays
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cluster visualization
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shortest paths
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R
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bayesian networks
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variant analysis
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python
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protein dynamics
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post-translational modification
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Pathway analysis
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non-coding RNA
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network repository
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inference
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graph clustering
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genome visualization
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drug repurposing
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disease module
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disease-disease association
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Community detection
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Cancer
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Boolean Network
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Cluster visualization
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boundaryLayout
A Force-Directed Network Layout with Custom Boundary Constraints
boundaryLayout
A Force-Directed Network Layout with Custom Boundary Constraints
(2) 11412 downloads
CoordinatesLayout
Load a graph with a layout that locates its nodes according to predefined 2D coordinates (typically GPS coordinates).
CoordinatesLayout
Load a graph with a layout that locates its nodes according to predefined 2D coordinates (typically GPS coordinates).
(9) 5213 downloads
MSClustering
an efficient app for hierarchical clustering and phylogenetics of complex networks
MSClustering
an efficient app for hierarchical clustering and phylogenetics of complex networks
(55) 2956 downloads
ClustnSee 3
clustering, module exploration and annotation
ClustnSee 3
clustering, module exploration and annotation
(1) 460 downloads
cyPlot
A utility to display data plots
cyPlot
A utility to display data plots
(1) 27436 downloads
YoshikoStandalone
Heuristic algorithms for weighted (k) cluster-editing. Works with Cytoscape 3.7.
YoshikoStandalone
Heuristic algorithms for weighted (k) cluster-editing. Works with Cytoscape 3.7.
(4) 2148 downloads
Unsupported Plugins for Cytoscape 2.x
