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data visualization
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network analysis
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network generation
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export
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molecular structure
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Random walk with restart algorithm
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microarrays
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gene co-expression
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shortest paths
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sequence similarity
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SBML
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R
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Protein complex
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variant analysis
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set visualization
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set analysis
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python
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protein dynamics
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post-translational modification
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Pathway analysis
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inference
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drug repurposing
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disease module
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disease-disease association
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Community detection
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Cancer
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Boolean Network
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Molecular structure
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chemViz2
Cheminformatics App for Cytoscape
chemViz2
Cheminformatics App for Cytoscape
(7) 21903 downloads
Mclique
Maximal Cliques in a given Cytoscape network, sorted by size
Mclique
Maximal Cliques in a given Cytoscape network, sorted by size
(15) 11008 downloads
XlinkCyNET
Generate residue-to-residue connections provided by XL-MS in protein interaction networks
XlinkCyNET
Generate residue-to-residue connections provided by XL-MS in protein interaction networks
(4) 13343 downloads
CyToStruct: external application hooking
Launching arbitrary external apps (such as viewers) for nodes/edges
CyToStruct: external application hooking
Launching arbitrary external apps (such as viewers) for nodes/edges
(27) 20440 downloads
RINalyzer
Provides a number of important methods for analyzing and visualizing residue interaction networks (RINs).
RINalyzer
Provides a number of important methods for analyzing and visualizing residue interaction networks (RINs).
(9) 7697 downloads
Unsupported Plugins for Cytoscape 2.x
ChemViz
Visualizes chemical structure of each compound in chemical network with original interface.
ChemViz
Visualizes chemical structure of each compound in chemical network with original interface.
(8)
structureViz
Enables user to traverse from biological networks to detailed view of their structures.
structureViz
Enables user to traverse from biological networks to detailed view of their structures.
(4)
