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data visualization
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network analysis
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network generation
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export
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molecular structure
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linked data
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Connection sub-graph discovery
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centrality analysis
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simulation
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Random walk with restart algorithm
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network learning
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microarrays
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gene co-expression
(6)
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social network analysis
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shortest paths
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sequence similarity
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SBML
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R
(5)
Protein complex
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structural biology
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kegg
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bayesian networks
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variant analysis
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set visualization
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set analysis
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python
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protein dynamics
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post-translational modification
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pathway reconstruction
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Pathway analysis
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inference
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graph clustering
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genome visualization
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drug repurposing
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disease module
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disease-disease association
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Community detection
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Cancer
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Boolean Network
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Molecular structure
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chemViz2
Cheminformatics App for Cytoscape
chemViz2
Cheminformatics App for Cytoscape
(7) 21569 downloads
Mclique
Maximal Cliques in a given Cytoscape network, sorted by size
Mclique
Maximal Cliques in a given Cytoscape network, sorted by size
(15) 10956 downloads
XlinkCyNET
Generate residue-to-residue connections provided by XL-MS in protein interaction networks
XlinkCyNET
Generate residue-to-residue connections provided by XL-MS in protein interaction networks
(4) 13115 downloads
CyToStruct: external application hooking
Launching arbitrary external apps (such as viewers) for nodes/edges
CyToStruct: external application hooking
Launching arbitrary external apps (such as viewers) for nodes/edges
(27) 20347 downloads
RINalyzer
Provides a number of important methods for analyzing and visualizing residue interaction networks (RINs).
RINalyzer
Provides a number of important methods for analyzing and visualizing residue interaction networks (RINs).
(9) 7634 downloads
Unsupported Plugins for Cytoscape 2.x
ChemViz
Visualizes chemical structure of each compound in chemical network with original interface.
ChemViz
Visualizes chemical structure of each compound in chemical network with original interface.
(8)
structureViz
Enables user to traverse from biological networks to detailed view of their structures.
structureViz
Enables user to traverse from biological networks to detailed view of their structures.
(4)
