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data visualization
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network analysis
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network generation
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graph analysis
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export
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molecular structure
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centrality analysis
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3d visualization
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simulation
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Random walk with restart algorithm
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network learning
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microarrays
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gene co-expression
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cluster visualization
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social network analysis
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shortest paths
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sequence similarity
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R
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Protein complex
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Pathway finding
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Gene prioritization
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structural biology
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search
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kegg
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bayesian networks
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variant analysis
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subnetwork extraction
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set visualization
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set analysis
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python
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protein dynamics
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post-translational modification
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pathway reconstruction
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Pathway analysis
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network repository
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inference
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graph clustering
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genome visualization
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drug repurposing
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disease module
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disease-disease association
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Community detection
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Cancer
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Boolean Network
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Centrality analysis
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CytoNCA
Providing calculation, evaluation and visualization analysis for several centralities of weighted and unweighted network.
CytoNCA
Providing calculation, evaluation and visualization analysis for several centralities of weighted and unweighted network.
(9) 97139 downloads
DyNetViewer
Construction, analysis, and visualization of dynamic networks in Cytoscape 3.0
DyNetViewer
Construction, analysis, and visualization of dynamic networks in Cytoscape 3.0
(4) 9992 downloads
Network Randomizer
A tool for creating random networks and comparing them to the real ones
Network Randomizer
A tool for creating random networks and comparing them to the real ones
(5) 13012 downloads
RINspector
Combines centrality analyses of Residue Interaction Networks (RIN) with DynaMine flexibility predictions
RINspector
Combines centrality analyses of Residue Interaction Networks (RIN) with DynaMine flexibility predictions
(5) 7495 downloads
DynDiffNet
a Cytoscape app for dynamic differential network construction, analysis and visualization
DynDiffNet
a Cytoscape app for dynamic differential network construction, analysis and visualization
(0) 399 downloads
MCDS
Approximates the minimum connected dominating set (MCDS) of directed networks.
MCDS
Approximates the minimum connected dominating set (MCDS) of directed networks.
(14) 5305 downloads
RINalyzer
Provides a number of important methods for analyzing and visualizing residue interaction networks (RINs).
RINalyzer
Provides a number of important methods for analyzing and visualizing residue interaction networks (RINs).
(9) 7697 downloads
Unsupported Plugins for Cytoscape 2.x
