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Cytoscape 2.x Plugins
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data visualization
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network analysis
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heat map visualization
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export
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networks
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disease
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cancer data analysis
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gene regulation
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animation
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molecular structure
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linked data
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ID mapping
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gene-disease association
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centrality analysis
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simulation
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Random walk with restart algorithm
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network learning
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microarrays
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gene co-expression
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cluster visualization
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social network analysis
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shortest paths
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sequence similarity
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SBML
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R
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Protein complex
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Pathway finding
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network alignment
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Gene prioritization
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structural biology
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signaling
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Pathway analysis
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kegg
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JavaScript
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gene function prediction
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flux analysis
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bayesian networks
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variant analysis
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subnetwork extraction
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set visualization
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set analysis
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python
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protein dynamics
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post-translational modification
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pathway reconstruction
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non-coding RNA
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network repository
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inference
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graph clustering
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genome visualization
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drug repurposing
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disease module
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disease-disease association
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Cytoscape
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Community detection
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Cancer
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Boolean Network
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R
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CyNetworkBMA
Infers gene regulatory networks from expression measurements using Bayesian Model Averaging.
CyNetworkBMA
Infers gene regulatory networks from expression measurements using Bayesian Model Averaging.
(1)
5075 downloads
Cyrface
Bridging Cytoscape with R
Cyrface
Bridging Cytoscape with R
(7)
6759 downloads
cyREST
Core App: Language-agnostic RESTful API
cyREST
Core App: Language-agnostic RESTful API
(4)
183493 downloads
ReactomeFIPlugIn
Explore Reactome pathways and search for diseases related pathways and network patterns using the Reactome functional interaction network
ReactomeFIPlugIn
Explore Reactome pathways and search for diseases related pathways and network patterns using the Reactome functional interaction network
(23)
157432 downloads
