Submit an App
Submit a 3.0 App
Guide to 3.0 App Development
Sign In
All Apps
Categories
collections
(4)
data visualization
(76)
network generation
(61)
network analysis
(59)
graph analysis
(59)
online data import
(47)
automation
(45)
integrated analysis
(38)
clustering
(38)
utility
(32)
systems biology
(32)
enrichment analysis
(31)
visualization
(28)
data integration
(28)
core app
(25)
layout
(22)
annotation
(21)
pathway database
(18)
ontology analysis
(18)
import
(18)
gene expression
(18)
network comparison
(16)
local data import
(16)
functional analysis
(16)
interaction database
(15)
PPI-network
(14)
Network structure
(14)
scripting
(13)
network dynamics
(12)
GO annotation
(12)
regulatory networks
(11)
Topology
(10)
network inference
(10)
heat map visualization
(10)
pathway
(9)
networks
(9)
network manipulation
(9)
export
(9)
cancer data analysis
(9)
gene regulation
(8)
functional module detection
(8)
disease
(8)
database
(8)
attribute generation
(8)
animation
(8)
network partitioning
(7)
molecular structure
(7)
linked data
(7)
ID mapping
(7)
grouping
(7)
gene-disease association
(7)
Connection sub-graph discovery
(7)
simulation
(6)
Random walk with restart algorithm
(6)
network learning
(6)
microarrays
(6)
centrality analysis
(6)
3d visualization
(6)
social network analysis
(5)
shortest paths
(5)
sequence similarity
(5)
R
(5)
Protein complex
(5)
Pathway finding
(5)
network alignment
(5)
Gene prioritization
(5)
gene co-expression
(5)
data manipulation
(5)
cluster visualization
(5)
structural biology
(4)
SPARQL
(4)
signaling
(4)
search
(4)
SBML
(4)
literature mining
(4)
JavaScript
(4)
gene function prediction
(4)
flux analysis
(4)
variant analysis
(3)
set visualization
(3)
set analysis
(3)
python
(3)
protein dynamics
(3)
post-translational modification
(3)
pathway reconstruction
(3)
network repository
(3)
kegg
(3)
inference
(3)
genome visualization
(3)
disease-disease association
(3)
Cancer
(3)
Boolean Network
(3)
bayesian networks
(3)
Linked data
Search for posts about linked data →
Ask a question about linked data →
cyBrowser
Core App: Add HTML Browser to Cytoscape
cyBrowser
Core App: Add HTML Browser to Cytoscape
(0) 34820 downloads
FileWatcher
An App to Link Networks with Excel Files
FileWatcher
An App to Link Networks with Excel Files
(0) 2719 downloads
Omics Visualizer
Import & Visualize several data for the same node
Omics Visualizer
Import & Visualize several data for the same node
(8) 11002 downloads
WikiDataScape
A WikiData explorer for Cytoscape
WikiDataScape
A WikiData explorer for Cytoscape
(3) 7335 downloads
CyLinkPredictor
Link Predictor Based on Common Neighbors
CyLinkPredictor
Link Predictor Based on Common Neighbors
(3) 2010 downloads
General SPARQL
Navigate SPARQL endpoints. Comes with a predefined set of SPARQL queries that work with public endpoints from EBI RDF platform and Bio2RDF
General SPARQL
Navigate SPARQL endpoints. Comes with a predefined set of SPARQL queries that work with public endpoints from EBI RDF platform and Bio2RDF
(10) 13803 downloads
SemScape
Visualizes Semantic Data Landscapes
SemScape
Visualizes Semantic Data Landscapes
(35) 6138 downloads
Unsupported Plugins for Cytoscape 2.x
