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Categories
data visualization
(78)
network analysis
(64)
network generation
(62)
graph analysis
(60)
automation
(48)
online data import
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clustering
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integrated analysis
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systems biology
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utility
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enrichment analysis
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visualization
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data integration
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core app
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annotation
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layout
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pathway database
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ontology analysis
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import
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gene expression
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network comparison
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local data import
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functional analysis
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PPI-network
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interaction database
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Network structure
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scripting
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regulatory networks
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network dynamics
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GO annotation
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Topology
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network inference
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heat map visualization
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export
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pathway
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networks
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network manipulation
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functional module detection
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disease
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cancer data analysis
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network partitioning
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gene regulation
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database
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attribute generation
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animation
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molecular structure
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linked data
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ID mapping
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grouping
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gene-disease association
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Connection sub-graph discovery
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centrality analysis
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3d visualization
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simulation
(6)
Random walk with restart algorithm
(6)
network learning
(6)
microarrays
(6)
gene co-expression
(6)
cluster visualization
(6)
social network analysis
(5)
shortest paths
(5)
sequence similarity
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SBML
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R
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Protein complex
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Pathway finding
(5)
network alignment
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Gene prioritization
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data manipulation
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structural biology
(4)
SPARQL
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signaling
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search
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literature mining
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kegg
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JavaScript
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gene function prediction
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flux analysis
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bayesian networks
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variant analysis
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subnetwork extraction
(3)
set visualization
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set analysis
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python
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protein dynamics
(3)
post-translational modification
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pathway reconstruction
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Pathway analysis
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non-coding RNA
(3)
network repository
(3)
inference
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graph clustering
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genome visualization
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drug repurposing
(3)
disease module
(3)
disease-disease association
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Community detection
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Cancer
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Boolean Network
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Social network analysis
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cytoHubba
Predicts and explores important nodes and subnetworks in a given network by several topological algorithms.
cytoHubba
Predicts and explores important nodes and subnetworks in a given network by several topological algorithms.
(168) 159772 downloads
Motif-Discovery
It allows the user to do "Network Motif Discovery" in a fast and friendly way. It uses the G-Tries algorithm which is the fastest one.
Motif-Discovery
It allows the user to do "Network Motif Discovery" in a fast and friendly way. It uses the G-Tries algorithm which is the fastest one.
(12) 11678 downloads
SocialNetwork
Summarizes how individuals are connected by building networks where nodes represent authors and edges represent publications.
SocialNetwork
Summarizes how individuals are connected by building networks where nodes represent authors and edges represent publications.
(5) 12657 downloads
Diffusion
Expand node selection using network propagation algorithms
Diffusion
Expand node selection using network propagation algorithms
(35) 30346 downloads
PEmeasure
Compute links weights and assess the reliability of the links in a network (e.g. protein-protein interactions)
PEmeasure
Compute links weights and assess the reliability of the links in a network (e.g. protein-protein interactions)
(10) 3335 downloads
Unsupported Plugins for Cytoscape 2.x
