NetworkAnalyzer

Calculates topological properties of a network (degree distribution, clustering coefficients, centrality, etc.)
Categories: core app, graph analysis
## *Core App*: NetworkAnalyzer ### Note: This app is now included in the Cytoscape installation. It is pre-installed in all 3.x versions of Cytoscape. **_You should not download this app_ from the store yourself. If Cytoscape detects that a new version is available in the App Store, it will notify you as it's starting and will give you a chance to download it directly.** NetworkAnalyzer performs analysis of biological networks and calculates network topology parameters including the diameter of a network, the average number of neighbors, and the number of connected pairs of nodes. It also computes the distributions of more complex network parameters such as node degrees, average clustering coefficients, topological coefficients, and shortest path lengths. It displays the results in diagrams, which can be saved as images or text files.

4.6.0

Works with Cytoscape 3.10

Release Notes

- Fixed incorrect calculation for "characteristic path length", which also affected the values of columns **BetweennessCentrality**, **Stress** (Node Table) and **EdgeBetweenness** (Edge Table). - Fixes incorrect values in the **Radiality** column (Node Table). - Fixes error that prevented the chart dialogs from being displayed for _directed_ analysis results -- the user can now choose the **Indegree** or **Outdegree** column for the charts. - The **Degree** column is now produced by _directed_ analysis as well (meaning "total degree"). - The _directed_ analysis no longer creates the **EdgeCount** column -- use **Degree** instead. - Adds brief documentation of each statistic to the results panel. - Several other UI improvements.

4.5.0

Works with Cytoscape 3.8


4.4.8

Works with Cytoscape 3.8


4.4.6

Works with Cytoscape 3.8

Release Notes

Bugfix release that improves the UI.

4.4.5

Works with Cytoscape 3.8


3.3.2

Works with Cytoscape 3.3


3.3.1

Works with Cytoscape 3.3

Apps that depend on this release


3.3.0

Works with Cytoscape 3.3


CYTOSCAPE 3

Version 4.6.0

License Click here

Released 24 Aug 2026

Works with Cytoscape 3.10

Download Stats Click here

CYTOSCAPE 2

Version 2.8

Released 3 Dec 2010

Works with Cytoscape 2.8