cyChart

An interactive tool to define filters
## *Core App*: cyChart ### Note: This app is pre-installed in Cytoscape 3.9 or later **_You should not download this app_ from the store yourself. If Cytoscape detects that a new version is available in the App Store, it will notify you as it's starting and will give you a chance to download it directly.** **_You should not download this app_ if your Cytoscape is earlier than 3.9. An earlier version of this app is pre-installed in your Cytoscape, and this app cannot replace it.** Provides histogram or scatter plot distributions of any node statistic with the ability to select a region of the plot. As the area on the plot is selected, the corresponding nodes in the network are all selected. cyChart adds items to the popup menus associated with the column headers of the Node table. Right-clicking on the column header with offer the ability to create either a Histogram filter or a Scatter filter. Within each chart, the axes can selected and the data region of the chart can be selected to highlight a region of the data space. The button to Create Filter... will copy the specification to the Filters tab of the Control Panel. Export Image will create a PNG file of the current chart. The following **Commands** are available to invoke cyChart from scripts: cychart histogram   #Launch a histogram chart in a separate window cychart scatter   #Launch a Scatter chart in a separate window

0.3.1

Works with Cytoscape 3.7


0.3.0

Works with Cytoscape 3.7

Release Notes

volcano plot selection, fixes bad stats in histogram footer

0.2.1

Works with Cytoscape 3.7


0.1.5

Works with Cytoscape 3.6


0.1.4

Works with Cytoscape 3.6


0.1.3

Works with Cytoscape 3.6


CYTOSCAPE 3

Version 0.3.1

Released 12 Aug 2021

Works with Cytoscape 3.7

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