Submit an App
Submit a 3.0 App
Guide to 3.0 App Development
Sign In
All Apps
Categories
collections
(4)
data visualization
(75)
network generation
(60)
network analysis
(59)
graph analysis
(58)
online data import
(47)
automation
(42)
integrated analysis
(38)
clustering
(37)
systems biology
(33)
utility
(31)
visualization
(29)
enrichment analysis
(29)
data integration
(27)
layout
(21)
annotation
(21)
core app
(20)
ontology analysis
(18)
import
(18)
pathway database
(17)
network comparison
(17)
local data import
(16)
gene expression
(16)
functional analysis
(16)
interaction database
(14)
scripting
(13)
PPI-network
(13)
Network structure
(12)
network dynamics
(12)
GO annotation
(12)
regulatory networks
(11)
network inference
(10)
Topology
(9)
network manipulation
(9)
heat map visualization
(9)
export
(9)
pathway
(8)
networks
(8)
gene regulation
(8)
functional module detection
(8)
disease
(8)
database
(8)
cancer data analysis
(8)
attribute generation
(8)
animation
(8)
linked data
(7)
ID mapping
(7)
simulation
(6)
Random walk with restart algorithm
(6)
network partitioning
(6)
network learning
(6)
molecular structure
(6)
microarrays
(6)
grouping
(6)
gene-disease association
(6)
Connection sub-graph discovery
(6)
centrality analysis
(6)
social network analysis
(5)
shortest paths
(5)
sequence similarity
(5)
R
(5)
Protein complex
(5)
Pathway finding
(5)
network alignment
(5)
Gene prioritization
(5)
data manipulation
(5)
structural biology
(4)
SPARQL
(4)
signaling
(4)
literature mining
(4)
kegg
(4)
JavaScript
(4)
gene function prediction
(4)
gene co-expression
(4)
disease-disease association
(4)
cluster visualization
(4)
3d visualization
(4)
variant analysis
(3)
set visualization
(3)
set analysis
(3)
search
(3)
SBML
(3)
protein dynamics
(3)
pathway reconstruction
(3)
network repository
(3)
inference
(3)
genome visualization
(3)
flux analysis
(3)
bayesian networks
(3)
Gene regulation
Search for posts about gene regulation →
Ask a question about gene regulation →
CyTargetLinker
Flexible network extension app
CyTargetLinker
Flexible network extension app
(39) 28277 downloads
GRNCOP2
Model-free combinatorial optimization algorithm to infer time-delayed gene regulatory networks from genome-wide time series datasets.
GRNCOP2
Model-free combinatorial optimization algorithm to infer time-delayed gene regulatory networks from genome-wide time series datasets.
(3) 839 downloads
Rene
Regulatory Network Enhancing Plugin - ReNE allows users to enhance standard KEGG/Reactome pathways wit
Rene
Regulatory Network Enhancing Plugin - ReNE allows users to enhance standard KEGG/Reactome pathways wit
(12) 19365 downloads
TETRAMER
A Temporal Transcription regulation modeler to predict master regulators
TETRAMER
A Temporal Transcription regulation modeler to predict master regulators
(24) 1438 downloads
cyTransFinder
Signal Transduction Pathway Finder
cyTransFinder
Signal Transduction Pathway Finder
(3) 12254 downloads
iRegulon
Detects master regulators and cis-regulatory interactions
iRegulon
Detects master regulators and cis-regulatory interactions
(10) 18029 downloads
SDP Model Builder
Cytoscape 3 app that interfaces with Selventa Development Platform
SDP Model Builder
Cytoscape 3 app that interfaces with Selventa Development Platform
(0) 1069 downloads
Unsupported Plugins for Cytoscape 2.x
DomainGraph
Visualizes domain-domain interactions which connect pairs of interacting proteins.
DomainGraph
Visualizes domain-domain interactions which connect pairs of interacting proteins.
(7)
