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Guide to 3.0 App Development
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data visualization
(78)
network analysis
(64)
network generation
(63)
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(60)
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(49)
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networks
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Connection sub-graph discovery
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simulation
(6)
Random walk with restart algorithm
(6)
network learning
(6)
microarrays
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(5)
shortest paths
(5)
sequence similarity
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R
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network alignment
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structural biology
(4)
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search
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kegg
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gene function prediction
(4)
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bayesian networks
(4)
variant analysis
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subnetwork extraction
(3)
set visualization
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set analysis
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python
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protein dynamics
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post-translational modification
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pathway reconstruction
(3)
non-coding RNA
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network repository
(3)
inference
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graph clustering
(3)
genome visualization
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drug repurposing
(3)
disease module
(3)
disease-disease association
(3)
Cytoscape
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Community detection
(3)
Cancer
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Boolean Network
(3)
Networks
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BEL Navigator
Explore OpenBEL knowledge networks within Cytoscape 3.
BEL Navigator
Explore OpenBEL knowledge networks within Cytoscape 3.
(0) 3696 downloads
Largest Subnetwork
Selects the largest connected component in a network
Largest Subnetwork
Selects the largest connected component in a network
(4) 13199 downloads
OmniPath
OmniPath: literature curated human signaling pathways
OmniPath
OmniPath: literature curated human signaling pathways
(17) 21635 downloads
PEWCC
Detect dense sub-network (e.g. protein/gene complexes) in network (e.g. PPI/gene network)
PEWCC
Detect dense sub-network (e.g. protein/gene complexes) in network (e.g. PPI/gene network)
(8) 4520 downloads
TimeNexus
Build, manage and visualize temporal multilayer networks, as well as extract active multilayer subnetworks.
TimeNexus
Build, manage and visualize temporal multilayer networks, as well as extract active multilayer subnetworks.
(1) 2952 downloads
CytoMOBAS
Identifies and analyzes disease associated and highly connected subnetworks.
CytoMOBAS
Identifies and analyzes disease associated and highly connected subnetworks.
(0) 4543 downloads
Motif-Discovery
It allows the user to do "Network Motif Discovery" in a fast and friendly way. It uses the G-Tries algorithm which is the fastest one.
Motif-Discovery
It allows the user to do "Network Motif Discovery" in a fast and friendly way. It uses the G-Tries algorithm which is the fastest one.
(15) 15003 downloads
Petri Net Implementation for Cytoscape
Implements Petri nets for Cytoscape, allowing creation, loading, export and simulation of Petri nets
Petri Net Implementation for Cytoscape
Implements Petri nets for Cytoscape, allowing creation, loading, export and simulation of Petri nets
(4) 4033 downloads
SiGNetApp
A Cytoscape App for producing network inference benchmarking data
SiGNetApp
A Cytoscape App for producing network inference benchmarking data
(0) 2933 downloads
