DisGeNET-app

Query, analyze, and visualize DISGENET data
The DISGENET Cytoscape App is designed to visualize, query, and analyze a network representation of DISGENET data. It assists users in interpreting and exploring the genetic basis of human diseases through various built-in functions. With the DISGENET Cytoscape App, users can easily generate gene-disease and variant-disease networks. These networks can be customized based on: (i) The original data source (ii) A protein class of interest (iii) A disease class of interest (iv) Specific diseases, genes, or variants, as well as lists and combinations of them (v) A range of scores or Evidence Index The app also allows: <p> 1. Colouring nodes by disease class <p> 2. Accessing the data via REST <p> 3. Expanding node information by data source <p> 4. Easy annotation of external protein, and variant networks with diseases <p> **Terms of use** <p> The DISGENET database and knowledge discovery platform at <https://www.disgenet.com> are provided by [https://www.medbioinformatics.com Medbioinformatics Solutions SL] to advance the knowledge about human diseases and their associated genes and variants. License fees are applicable for the commercial use of DISGENET. Users from not-for-profit organizations who plan to use DISGENET for non-commercial purposes can apply for free access (through an Academic license). Users who plan to use DISGENET for commercial purposes and/or belong to for-profit organizations must pay a fee to acquire a DISGENET license.

8.0.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs


8.0.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs


7.3.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

new parameters added to the enrichment function

7.2.6

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Fixed exceptions

7.2.5

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

fixed minor bugs

7.2.4

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Parameters of the enrichment panel in agreement with DisGeNET REST API enrichment

7.2.3

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Removed gene and disease projections Solved bug with enrichment analysis

7.2.2

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

fixed bug with edges of the enrichment

7.2.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Fixed bugs with enrichment p values

7.2.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

We have added disease enrichment for variant and gene networks to the endpoints of the Cytoscape REST API

7.1.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs


7.1.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs


7.0.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs


6.3.2

Works with Cytoscape 3.6


6.3.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs


6.3.0

Works with Cytoscape 3.6


6.2.2

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

ClinVar, GWAS catalog and GWASdb have been added as gene-disease network sources

6.2.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

new filters have been added to the external network annotation menu Fixed minor bug in the evidence level filter in the external network annotation menu

6.2.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

added possibility of changing database location implemented new filters for expand function and for annotating external networks

6.0.3

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Fixed bug in search with wild card character in gene box in VDAs tab Fixed bug in filter by association type in VDAs tab

6.0.2

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Fixed expand gene function

6.0.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs


6.0.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs


5.4.0

Works with Cytoscape 3.6

API   pom.xml   Javadocs


5.3

Works with Cytoscape 3.6

API   pom.xml   Javadocs


5.2

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Automation added

5.1

Works with Cytoscape 3.6

API   pom.xml   Javadocs

Release Notes

Corrected bugs Added utilities to explore variant-disease associations

5.0

Works with Cytoscape 3.2

API   pom.xml   Javadocs


1.0

Works with Cytoscape 3.2

API   pom.xml   Javadocs


CYTOSCAPE 3

Version 8.0.1

Released 11 Jul 2024

Works with Cytoscape 3.6

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