BioGateway Cytoscape Plugin

An explorative network building plugin that works with the BioGateway triple store
Categories: network generation
The BioGateway App is a Cytoscape plugin designed to provide easy query access to the BioGateway RDF triple store, which contains functional and interaction information for proteins from several curated resources. For explorative network building, we have added a comprehensive dataset with regulatory relationships of mammalian DNA binding transcription factors and their target genes, compiled both from curated resources and from a text mining effort. Query results are visualised using the inherent flexibility of the Cytoscape framework, and network links can be checked against curated database records or against the original publication.


Works with Cytoscape 3.4


Works with Cytoscape 3.4


Version 3.2.1

Released 8 May 2020

Works with Cytoscape 3.4

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