Functional analysis of MS-based proteomics data: from protein groups to networks

Finds clusters and visually annotates them with labels and groups.

Import and analyze Cytoscape networks from FunCoup

Simple 3D Network Renderer App

Import and augment Cytoscape networks from STRING

Query, analyze, and visualize DISGENET data

Creates and visualizes a functionally grouped network of terms/pathways

Clusters a given network based on topology to find densely connected regions.

CluePedia: A ClueGO plugin for pathway insights using integrated experimental and in silico data

Import and augment Cytoscape networks from STRING

Highly sophisticated algorithms for arranging networks.

Calculates overrepresented GO terms in the network and display them as a network of significant GO terms.