General SPARQL

Navigate SPARQL endpoints. Comes with a predefined set of SPARQL queries that work with public endpoints from EBI RDF platform and Bio2RDF
The General SPARQL app lets you navigate the semantic web using an extensible set of pre-defined queries. You can start from a single entity of interest (such as a protein) and expand the network. The app is pre-configured to visualise public data from Reactome, Uniprot, HGNC, NCBI Taxonomy, Chembl and other public resources. The app can be extended to work with any public or private RDF resource. The app is an open source contribution from [http://www.generalbioinformatics.com/ General Bioinformatics], available under GPL v2. Watch the screencast at http://goo.gl/v6Djyo See also the official [http://generalbioinformatics.github.io/general-sparql-cy3/ General SPARQL] website

1.12.160407

Works with Cytoscape 3.0

Release Notes

Added queries for public resources wikidata and wikipathways

1.12.151206

Works with Cytoscape 3.0

Release Notes

Can now ask parameters also on context queries No longer convert numeric attributes to String

1.11.151124

Works with Cytoscape 3.0

Release Notes

Fix bug where some queries no longer work due to changes in public SPARQL endpoint

1.11.150521

Works with Cytoscape 3.0

Release Notes

Updated query list. Fixed bugs in the "search for pathway", "search for disease" queries. Added set of queries for ExpressionAtlas from the EBI RDF platform.

1.11.150325

Works with Cytoscape 3.0

Release Notes

bugfix: indefinite progress bar with certain queries that produce more than a dozen nodes.

1.11.150319

Works with Cytoscape 3.0

Release Notes

bugfix: context queries didn't work if there was no node selected bugfix: matrix queries are now properly implemented A dialog now pops up when a context query returns 0 results

1.11.150317

Works with Cytoscape 3.0

Release Notes

bugfix: wrong driver was selected by default

1.11.150313

Works with Cytoscape 3.0


CYTOSCAPE 3

Version 1.12.160407

License Click here

Released 7 Apr 2016

Works with Cytoscape 3.0

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