Uses of Class
cyTransFinder.CyActivator

Uses of CyActivator in cyTransFinder

Fields in cyTransFinder declared as CyActivator

Modifier and Type	Field and Description
protected CyActivator	Network.CY_ACTIVATOR
protected CyActivator	WebserviceTask_NCBI.myActivator
protected CyActivator	NetworkReactomeTask.myActivator

Constructors in cyTransFinder with parameters of type CyActivator

Constructor and Description
MyCytoPanel(CyActivator activator)
Network(org.cytoscape.model.CyNetwork network, CyActivator activator)
NetworkFromSources(File FILE, String EXTENSION, String FILE_MEANING, CyActivator myActivator)
NetworkReactome(String CODE, CyActivator myActivator, org.cytoscape.model.CyNetwork myOriginalNetwork)
NetworkReactomeTask(BufferedInputStream BIS, CyActivator myActivator)
WebserviceTask_mirIAD_InterGenic(CyActivator CY_ACTIVATOR, Set<org.cytoscape.model.CyNode> GENE_NODES, MyCytoPanel myCytoPanel, String ENHANCE_TYPE, int ITER)
WebserviceTask_mirIAD(CyActivator CY_ACTIVATOR, Set<org.cytoscape.model.CyNode> GENE_NODES, MyCytoPanel myCytoPanel, String ENHANCE_TYPE, int ITER)
WebserviceTask_motifProcessing(CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel, String[] MYMOTIF, String IntraInterMirna)
WebserviceTask_motifTypeParser(File FILE, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel, String FULLSIMPLE)
WebserviceTask_NCBI(Set<org.cytoscape.model.CyNode> GENE_NODES, String[] values, String TYPE, CyActivator myActivator, NetworkFromSources networkFromSources)
WebserviceTask_TargetHub(Set<org.cytoscape.model.CyNode> GENE_NODES, Set<org.cytoscape.model.CyNode> MIRNA_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, boolean MATURE_STEMLOOP, boolean DBNAMES_or_SOURCESNUMBER, boolean EXACT_ATLEAST, int VALUE_EXACTATLEAST, boolean MIRANDA, boolean MIRTARBASE, boolean PICTAR, boolean TARGETSCAN, MyCytoPanel myCytoPanel, String Modality, Map<String,String> listAllTF, String temporaryActualType)
WebserviceTask_TFe(String ORGANISM, Set<org.cytoscape.model.CyNode> GENE_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW)
WebserviceTask_TFTargetmine(String ORGANISM, Set<org.cytoscape.model.CyNode> GENE_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel, String FUNCTION, int Iter)
WebserviceTask_UCSC(String ORGANISM, Set<org.cytoscape.model.CyNode> GENE_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel)
WebserviceTask_Uniprot(String ORGANISM, Set<org.cytoscape.model.CyNode> GENE_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel)