cyTransFinder

Class CyActivator

java.lang.Object

org.cytoscape.service.util.AbstractCyActivator

cyTransFinder.CyActivator

All Implemented Interfaces:

org.osgi.framework.BundleActivator

public class CyActivator
extends org.cytoscape.service.util.AbstractCyActivator

Field Summary

Fields

Modifier and Type	Field and Description
protected List<Map<String,String>>	IntronicMirnaList

Constructor Summary

Constructors

Constructor and Description
CyActivator()

Method Summary

Modifier and Type	Method and Description
org.cytoscape.model.CyNetworkFactory	getCyNetworkFactoryServiceRef()
org.cytoscape.model.CyNetworkManager	getCyNetworkManagerServiceRef()
org.cytoscape.session.CyNetworkNaming	getCyNetworkNamingServiceRef()
org.cytoscape.view.model.CyNetworkViewFactory	getCyNetworkViewFactoryServiceRef()
org.cytoscape.view.model.CyNetworkViewManager	getCyNetworkViewManagerServiceRef()
org.cytoscape.model.CyNetwork	getMyCyNet()
Network	getMyNetwork()
org.cytoscape.view.model.CyNetworkView	getMyView()
org.cytoscape.view.vizmap.VisualStyleFactory	getVisualStyleFactoryServiceRef()
org.cytoscape.view.vizmap.VisualMappingFunctionFactory	getVmfFactoryC()
org.cytoscape.view.vizmap.VisualMappingFunctionFactory	getVmfFactoryD()
org.cytoscape.view.vizmap.VisualMappingFunctionFactory	getVmfFactoryP()
org.cytoscape.view.vizmap.VisualMappingManager	getVmmServiceRef()
void	start(org.osgi.framework.BundleContext bc)

Methods inherited from class org.cytoscape.service.util.AbstractCyActivator

getService, getService, registerAllServices, registerService, registerServiceListener, registerServiceListener, registerServiceListener, registerServiceListener, shutDown, stop

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

IntronicMirnaList

protected List<Map<String,String>> IntronicMirnaList

Constructor Detail

CyActivator

public CyActivator()

Method Detail

start

public void start(org.osgi.framework.BundleContext bc)
           throws IOException,
                  XPathExpressionException

Throws:

IOException

XPathExpressionException

getMyCyNet

public org.cytoscape.model.CyNetwork getMyCyNet()

getMyNetwork

public Network getMyNetwork()

getMyView

public org.cytoscape.view.model.CyNetworkView getMyView()

getCyNetworkViewFactoryServiceRef

public org.cytoscape.view.model.CyNetworkViewFactory getCyNetworkViewFactoryServiceRef()

getCyNetworkViewManagerServiceRef

public org.cytoscape.view.model.CyNetworkViewManager getCyNetworkViewManagerServiceRef()

getCyNetworkNamingServiceRef

public org.cytoscape.session.CyNetworkNaming getCyNetworkNamingServiceRef()

getCyNetworkFactoryServiceRef

public org.cytoscape.model.CyNetworkFactory getCyNetworkFactoryServiceRef()

getCyNetworkManagerServiceRef

public org.cytoscape.model.CyNetworkManager getCyNetworkManagerServiceRef()

getVmmServiceRef

public org.cytoscape.view.vizmap.VisualMappingManager getVmmServiceRef()

getVisualStyleFactoryServiceRef

public org.cytoscape.view.vizmap.VisualStyleFactory getVisualStyleFactoryServiceRef()

getVmfFactoryC

public org.cytoscape.view.vizmap.VisualMappingFunctionFactory getVmfFactoryC()

getVmfFactoryD

public org.cytoscape.view.vizmap.VisualMappingFunctionFactory getVmfFactoryD()

getVmfFactoryP

public org.cytoscape.view.vizmap.VisualMappingFunctionFactory getVmfFactoryP()