cyTransFinder

Class WebserviceTask_Uniprot

java.lang.Object

org.cytoscape.work.AbstractTask

cyTransFinder.WebserviceTask_Uniprot

All Implemented Interfaces:

org.cytoscape.work.Task

public class WebserviceTask_Uniprot
extends org.cytoscape.work.AbstractTask

Field Summary

Fields

Modifier and Type	Field and Description
protected Document	document
protected String	geneID
protected MyCytoPanel	myCytoPanel

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
WebserviceTask_Uniprot(String ORGANISM, Set<org.cytoscape.model.CyNode> GENE_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel)

Method Summary

Modifier and Type	Method and Description
String	getAccessions()
String	getFullName()
String	getIsoforms()
String	getUniprotID()
void	run(org.cytoscape.work.TaskMonitor taskMonitor)

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

document

protected Document document

geneID

protected String geneID

myCytoPanel

protected MyCytoPanel myCytoPanel

Constructor Detail

WebserviceTask_Uniprot

public WebserviceTask_Uniprot(String ORGANISM,
                              Set<org.cytoscape.model.CyNode> GENE_NODES,
                              CyActivator CY_ACTIVATOR,
                              org.cytoscape.view.model.CyNetworkView MYVIEW,
                              MyCytoPanel myCytoPanel)

Method Detail

getFullName

public String getFullName()

getUniprotID

public String getUniprotID()

getAccessions

public String getAccessions()

getIsoforms

public String getIsoforms()

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Specified by:

run in class org.cytoscape.work.AbstractTask

Throws:

Exception