cyTransFinder

Class WebserviceTask_TargetHub

java.lang.Object

org.cytoscape.work.AbstractTask

cyTransFinder.WebserviceTask_TargetHub

All Implemented Interfaces:

org.cytoscape.work.Task

public class WebserviceTask_TargetHub
extends org.cytoscape.work.AbstractTask

Documentation: http://app1.bioinformatics.mdanderson.org/tarhub/_design/basic/api.html

Author:

JJSapido

Field Summary

Fields

Modifier and Type	Field and Description
protected MyCytoPanel	myCytoPanel

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description

WebserviceTask_TargetHub(Set<org.cytoscape.model.CyNode> GENE_NODES, Set<org.cytoscape.model.CyNode> MIRNA_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, boolean MATURE_STEMLOOP, boolean DBNAMES_or_SOURCESNUMBER, boolean EXACT_ATLEAST, int VALUE_EXACTATLEAST, boolean MIRANDA, boolean MIRTARBASE, boolean PICTAR, boolean TARGETSCAN, MyCytoPanel myCytoPanel, String Modality, Map<String,String> listAllTF, String temporaryActualType)

Method Summary

Modifier and Type	Method and Description
void	run(org.cytoscape.work.TaskMonitor taskMonitor)

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

myCytoPanel

protected MyCytoPanel myCytoPanel

Constructor Detail

WebserviceTask_TargetHub

public WebserviceTask_TargetHub(Set<org.cytoscape.model.CyNode> GENE_NODES,
                                Set<org.cytoscape.model.CyNode> MIRNA_NODES,
                                CyActivator CY_ACTIVATOR,
                                org.cytoscape.view.model.CyNetworkView MYVIEW,
                                boolean MATURE_STEMLOOP,
                                boolean DBNAMES_or_SOURCESNUMBER,
                                boolean EXACT_ATLEAST,
                                int VALUE_EXACTATLEAST,
                                boolean MIRANDA,
                                boolean MIRTARBASE,
                                boolean PICTAR,
                                boolean TARGETSCAN,
                                MyCytoPanel myCytoPanel,
                                String Modality,
                                Map<String,String> listAllTF,
                                String temporaryActualType)

Method Detail

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Specified by:

run in class org.cytoscape.work.AbstractTask

Throws:

Exception