cyTransFinder

Class NetworkReactome

java.lang.Object

cyTransFinder.NetworkReactome

public class NetworkReactome
extends Object

Constructor Summary

Constructors

Constructor and Description
NetworkReactome(String CODE, CyActivator myActivator, org.cytoscape.model.CyNetwork myOriginalNetwork)

Method Summary

Modifier and Type	Method and Description
static void	copyAttributes(org.cytoscape.model.CyRow fromRow, org.cytoscape.model.CyRow toRow) Copy the contents of one CyRow into another CyRow.
static void	copyToCyNetwork(org.cytoscape.model.CyNetwork copyFromNet, org.cytoscape.model.CyNetwork copyToNet, Collection<org.cytoscape.model.CyNode> nodes, Collection<org.cytoscape.model.CyEdge> edges) Copies nodes and edges from one CyNetwork to another without sharing.
protected void	finalization()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NetworkReactome

public NetworkReactome(String CODE,
                       CyActivator myActivator,
                       org.cytoscape.model.CyNetwork myOriginalNetwork)

Method Detail

copyToCyNetwork

public static void copyToCyNetwork(org.cytoscape.model.CyNetwork copyFromNet,
                                   org.cytoscape.model.CyNetwork copyToNet,
                                   Collection<org.cytoscape.model.CyNode> nodes,
                                   Collection<org.cytoscape.model.CyEdge> edges)

Copies nodes and edges from one CyNetwork to another without sharing.

Parameters:

copyFromNet - the CyNetwork from which to copy nodes and edges (source).

copyToNet - the CyNetwork receiving the copied nodes and edges (target).

nodes - A collection of CyEdges to copy into copyToNet.

edges - A collection of CyEdges to copy to copyToNet. All CyNodes that these edges connect to must be in nodes.

Throws:

IllegalArgumentException - if edges connects to any CyNodes not contained within nodes.

copyAttributes

public static void copyAttributes(org.cytoscape.model.CyRow fromRow,
                                  org.cytoscape.model.CyRow toRow)

Copy the contents of one CyRow into another CyRow.

Parameters:

fromRow - the CyRow to copy from (source).

toRow - the CyRow to copy to (target).

finalization

protected void finalization()