cyTransFinder

Class NetworkFromSources

java.lang.Object

cyTransFinder.NetworkFromSources

public class NetworkFromSources
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
String	tmpList

Constructor Summary

Constructors

Constructor and Description
NetworkFromSources(File FILE, String EXTENSION, String FILE_MEANING, CyActivator myActivator)

Method Summary

Modifier and Type	Method and Description
String[]	getSourceGenes()
String[]	getTargetGenes()
List<Map<String,String>>	getTfList()
protected String[]	parseCSV(BufferedReader bufferedReader)
protected void	parseTF(BufferedReader bufferedReader)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

tmpList

public String tmpList

Constructor Detail

NetworkFromSources

public NetworkFromSources(File FILE,
                          String EXTENSION,
                          String FILE_MEANING,
                          CyActivator myActivator)

Method Detail

parseCSV

protected String[] parseCSV(BufferedReader bufferedReader)

parseTF

protected void parseTF(BufferedReader bufferedReader)

getTfList

public List<Map<String,String>> getTfList()

getTargetGenes

public String[] getTargetGenes()

getSourceGenes

public String[] getSourceGenes()