Cytoscape App Store

Apps

	KEGGScape (keggscape)

	KEGGScape (keggscape)

	(0) 975 downloads

	CytoKegg
	Find Kegg pathways in a network. Import KEGG pathways into cytoscape.

	CytoKegg
	Find Kegg pathways in a network. Import KEGG pathways into cytoscape.
	(61) 42166 downloads

	DAPath
	Disease Associated Path Analyzer

	DAPath
	Disease Associated Path Analyzer
	(0) 4890 downloads

	MetDisease
	Annotates metabolic networks with MeSH disease terms and links to references.

	MetDisease
	Annotates metabolic networks with MeSH disease terms and links to references.
	(5) 10880 downloads

	Bisogenet
	Retrieves interactions associated with input IDs. Sophisticated UI gives links to GO, KEGG, etc.

	Bisogenet
	Retrieves interactions associated with input IDs. Sophisticated UI gives links to GO, KEGG, etc.
	(15) 82934 downloads

	CyPathia
	Mechanistic models of pathways for omics data interpretation and analysis

	CyPathia
	Mechanistic models of pathways for omics data interpretation and analysis
	(3) 2659 downloads

	ID Mapper
	A plug-in to the BridgeDB service to provide identifier lookup. Right-click on a column header to use the "Map Column" command.

	ID Mapper
	A plug-in to the BridgeDB service to provide identifier lookup. Right-click on a column header to use the "Map Column" command.
	(1) 19508 downloads

	Arena3DwebApp
	Visualize a 2D network as a multilayered 3D network in Arena3Dweb

	Arena3DwebApp
	Visualize a 2D network as a multilayered 3D network in Arena3Dweb
	(2) 2339 downloads

	KEGGscape
	File reader and pathway visualizer for KEGG XML (KGML) files

	KEGGscape
	File reader and pathway visualizer for KEGG XML (KGML) files
	(4) 109224 downloads

	CyKEGGParser
	KEGG pathway tuner: accurate, tissue- and protein-protein interaction-specific pathways

	CyKEGGParser
	KEGG pathway tuner: accurate, tissue- and protein-protein interaction-specific pathways
	(14) 63733 downloads

	MGG
	performs the microbetag workflow and visualise microbetag-annotated networks

	MGG
	performs the microbetag workflow and visualise microbetag-annotated networks
	(1) 1994 downloads

	Rene
	Regulatory Network Enhancing Plugin - ReNE allows users to enhance standard KEGG/Reactome pathways wit

	Rene
	Regulatory Network Enhancing Plugin - ReNE allows users to enhance standard KEGG/Reactome pathways wit
	(12) 40119 downloads

	Orthoscape
	Orthoscape aimed to analyze evolutionary information in the gene networks and gene sets

	Orthoscape
	Orthoscape aimed to analyze evolutionary information in the gene networks and gene sets
	(4) 17915 downloads

	MetScape
	Maps human, mouse and rat metabolomics and gene expression data to human metabolic networks and enables pathway and correlation analysis.

	MetScape
	Maps human, mouse and rat metabolomics and gene expression data to human metabolic networks and enables pathway and correlation analysis.
	(25) 66716 downloads

	Pathway Scoring Application
	Evaluates the biological activity of genes and processes in pathways

	Pathway Scoring Application
	Evaluates the biological activity of genes and processes in pathways
	(2) 10397 downloads

Authors