- Database - Interface in es.imim.DisGeNET.database
-
- DatabaseImpl - Class in es.imim.DisGeNET.database
-
Class implements all queries to create networks
- DatabaseImpl() - Constructor for class es.imim.DisGeNET.database.DatabaseImpl
-
- DatabaseManager - Interface in es.imim.DisGeNET.database
-
This interface handles the database connection for all database functions
- DatabaseManagerImpl - Class in es.imim.DisGeNET.database
-
Implementation of the DatabaseManager to handle db connection
If SQLite DB file cannot be found in chosen folder be it will automatically
downloaded from our server
- DatabaseProps - Class in es.imim.DisGeNET.database
-
Class that contains all the properties for constant values.
- DatabaseProps() - Constructor for class es.imim.DisGeNET.database.DatabaseProps
-
- deleteDirectory(File) - Static method in class es.imim.DisGeNET.tool.DownloadDBTask
-
- deleteFile(String) - Static method in class es.imim.DisGeNET.tool.DownloadDBTask
-
- deleteFile(String) - Static method in class es.imim.DisGeNET.tool.FileDownloadTools
-
- DIS_PROJ_LABEL - Static variable in class es.imim.DisGeNET.gui.GuiProps
-
- DIS_PROJ_SEARCH_FIELD - Static variable in class es.imim.DisGeNET.gui.GuiProps
-
- DIS_PROJ_SEARCH_LABEL - Static variable in class es.imim.DisGeNET.gui.GuiProps
-
- DIS_PROJ_SOURCE_LABEL - Static variable in class es.imim.DisGeNET.gui.GuiProps
-
- DIS_PROJ_TAB_TITLE - Static variable in class es.imim.DisGeNET.gui.GuiProps
-
- disClassOptions - Static variable in class es.imim.DisGeNET.validation.ParametersValidation
-
- DisColorLegendPanel - Class in es.imim.DisGeNET.gui
-
- DisColorLegendPanel(BorderLayout) - Constructor for class es.imim.DisGeNET.gui.DisColorLegendPanel
-
- DISEASE_CLASS_OPTIONS - Static variable in class es.imim.DisGeNET.gui.GuiProps
-
- DISEASE_CODE_REGEX - Static variable in class es.imim.DisGeNET.database.DatabaseProps
-
- DISEASE_CUI_REGEX - Static variable in class es.imim.DisGeNET.validation.NodeValidation
-
- DISEASE_LINKOUT_URL - Static variable in class es.imim.DisGeNET.internal.linkout.LinkoutProperties
-
- DISEASE_SEARCH_REGEX - Static variable in class es.imim.DisGeNET.database.DatabaseProps
-
- diseaseClasses - Variable in class es.imim.DisGeNET.internal.annotation.AnnotateGenesTask
-
- diseaseClasses - Variable in class es.imim.DisGeNET.internal.annotation.AnnotateVariantsTask
-
- diseaseClasses - Variable in class es.imim.DisGeNET.network.ExpandCurrentNetworkTask
-
- diseaseClasses - Variable in class es.imim.DisGeNET.network.ExpandNewNetworkTask
-
- diseaseClassSplitter(List<String>) - Static method in class es.imim.DisGeNET.tool.HelperFunctions
-
Iterates from a list of combinations of diseases classes and returns de disease classes found in non-repeated values array.
- DiseaseColourMapping - Class in es.imim.DisGeNET.network.colorMapping
-
simple function to map the color codes to the corresponding colours and names
- DiseaseColourMapping() - Constructor for class es.imim.DisGeNET.network.colorMapping.DiseaseColourMapping
-
- diseaseProjParameters(DiseaseProjParams) - Static method in class es.imim.DisGeNET.validation.ParametersValidation
-
- DiseaseProjParams - Class in es.imim.DisGeNET.network.automation.parameters
-
- DiseaseProjParams() - Constructor for class es.imim.DisGeNET.network.automation.parameters.DiseaseProjParams
-
- DiseaseProjParams(String, String, String) - Constructor for class es.imim.DisGeNET.network.automation.parameters.DiseaseProjParams
-
- DisGeNetCyTableBase - Class in es.imim.DisGeNET.internal.tables
-
Class that loads all the data for the table networks.
- DisGeNetCyTableBase() - Constructor for class es.imim.DisGeNET.internal.tables.DisGeNetCyTableBase
-
- DisGeNetCyTableBase(GuiParameters) - Constructor for class es.imim.DisGeNET.internal.tables.DisGeNetCyTableBase
-
- DisGeNetCyTableDisease - Class in es.imim.DisGeNET.internal.tables
-
Class to manage all the parameters relative to the diseases attributes of the cytoscape table.
- DisGeNetCyTableDisease(GuiParameters) - Constructor for class es.imim.DisGeNET.internal.tables.DisGeNetCyTableDisease
-
- DisGeNetCyTableDisease() - Constructor for class es.imim.DisGeNET.internal.tables.DisGeNetCyTableDisease
-
- DisGeNetCyTableGene - Class in es.imim.DisGeNET.internal.tables
-
Class to manage all the parameters relative to the gene attributes of the cytoscape table.
- DisGeNetCyTableGene(GuiParameters) - Constructor for class es.imim.DisGeNET.internal.tables.DisGeNetCyTableGene
-
- DisGeNetCyTableGene() - Constructor for class es.imim.DisGeNET.internal.tables.DisGeNetCyTableGene
-
- DisGeNETCyTableNodeInterface - Interface in es.imim.DisGeNET.internal.tables
-
- DisGeNetCyTableVariant - Class in es.imim.DisGeNET.internal.tables
-
Class to manage all the parameters relative to the gene attributes of the cytoscape table.
- DisGeNetCyTableVariant(GuiParameters) - Constructor for class es.imim.DisGeNET.internal.tables.DisGeNetCyTableVariant
-
- DisGeNETCytoPanel - Class in es.imim.DisGeNET.internal
-
- DisGeNETCytoPanel() - Constructor for class es.imim.DisGeNET.internal.DisGeNETCytoPanel
-
- DisGeNetException - Exception in es.imim.DisGeNET.exceptions
-
- DisGeNetException() - Constructor for exception es.imim.DisGeNET.exceptions.DisGeNetException
-
- DisGeNetException(String) - Constructor for exception es.imim.DisGeNET.exceptions.DisGeNetException
-
- DisGeNetException(Throwable) - Constructor for exception es.imim.DisGeNET.exceptions.DisGeNetException
-
- DisGeNetException(String, Throwable) - Constructor for exception es.imim.DisGeNET.exceptions.DisGeNetException
-
- DisGeNetException(String, Throwable, boolean, boolean) - Constructor for exception es.imim.DisGeNET.exceptions.DisGeNetException
-
- DisGenetStyleManager - Class in es.imim.DisGeNET.styles
-
Class that loads the DisGeNET style if the current session of the user doesn't contains it.
- disProj_DisClassComboBoxActionPerformed(ActionEvent) - Method in class es.imim.DisGeNET.gui.MainPanel
-
- DownloadDBTask - Class in es.imim.DisGeNET.tool
-
helper class to download extract the database file
- DownloadDBTask(String, String, String) - Constructor for class es.imim.DisGeNET.tool.DownloadDBTask
-