es.imim.DisGeNET.internal.tables

Class DisGeNetCyTableGene

java.lang.Object

es.imim.DisGeNET.internal.tables.DisGeNetCyTableGene

All Implemented Interfaces:

DisGeNETCyTableNodeInterface

public class DisGeNetCyTableGene
extends Object
implements DisGeNETCyTableNodeInterface

Class to manage all the parameters relative to the gene attributes of the cytoscape table.

Author:

jsauch

Constructor Summary

Constructors

Constructor and Description
DisGeNetCyTableGene()
DisGeNetCyTableGene(GuiParameters params)

Method Summary

Modifier and Type	Method and Description
void	addEdgeColumns(org.cytoscape.model.CyTable cyTable)
void	addNodeColumns(org.cytoscape.model.CyTable geneTable) Adds all the colums related to the diseases to the cytoscape table.
void	fillEdgeColumns(org.cytoscape.model.CyNetwork cyNetwork, Map<org.cytoscape.model.CyEdge,Map<String,Object>> edgeAttributes)
void	fillNodeColumns(org.cytoscape.model.CyTable geneTable, Map<String,Long> suids) Fills the gene related columns with the data retrived from the current search parameters.
GuiParameters	getParams()
void	setParams(GuiParameters params)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DisGeNetCyTableGene

public DisGeNetCyTableGene(GuiParameters params)

DisGeNetCyTableGene

public DisGeNetCyTableGene()

Method Detail

getParams

public GuiParameters getParams()

setParams

public void setParams(GuiParameters params)

addNodeColumns

public void addNodeColumns(org.cytoscape.model.CyTable geneTable)

Adds all the colums related to the diseases to the cytoscape table.

Specified by:

addNodeColumns in interface DisGeNETCyTableNodeInterface

Parameters:

geneTable - the table to add the columns.

fillNodeColumns

public void fillNodeColumns(org.cytoscape.model.CyTable geneTable,
                            Map<String,Long> suids)
                     throws DisGeNetException

Fills the gene related columns with the data retrived from the current search parameters.

Specified by:

fillNodeColumns in interface DisGeNETCyTableNodeInterface

Parameters:

geneTable - the table to fill the columns.

suids - the list of all the nodes with their identifiers.

Throws:

DisGeNetException - low level exception with the error message.

addEdgeColumns

public void addEdgeColumns(org.cytoscape.model.CyTable cyTable)

Specified by:

addEdgeColumns in interface DisGeNETCyTableNodeInterface

fillEdgeColumns

public void fillEdgeColumns(org.cytoscape.model.CyNetwork cyNetwork,
                            Map<org.cytoscape.model.CyEdge,Map<String,Object>> edgeAttributes)

Specified by:

fillEdgeColumns in interface DisGeNETCyTableNodeInterface