es.imim.DisGeNET.network

Class ExpandNewNetworkTask

java.lang.Object

org.cytoscape.work.AbstractTask

es.imim.DisGeNET.network.ExpandNewNetworkTask

All Implemented Interfaces:

org.cytoscape.work.Task

public class ExpandNewNetworkTask
extends org.cytoscape.work.AbstractTask
implements org.cytoscape.work.Task

Task class to create a new network with the selected nodes from a previous task.

Author:

jsauch

Field Summary

Fields

Modifier and Type	Field and Description
org.cytoscape.work.util.ListSingleSelection<String>	assocTypes
org.cytoscape.work.util.ListSingleSelection<String>	diseaseClasses
org.cytoscape.work.util.ListSingleSelection<String>	evidenceLevels
Double	maxScoreRange
Double	minScoreRange
org.cytoscape.work.util.ListSingleSelection<String>	sources

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
ExpandNewNetworkTask(org.cytoscape.view.model.CyNetworkView cyNetworkView, org.cytoscape.view.model.View<org.cytoscape.model.CyNode> cyNodeView)

Method Summary

Modifier and Type	Method and Description
String	getNetName()
String	getNetType()
void	run(org.cytoscape.work.TaskMonitor taskMonitor)
void	setNetName(String netName)
void	setNetType(String netType)

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, getTaskIterator, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.cytoscape.work.Task

cancel

Field Detail

sources

public org.cytoscape.work.util.ListSingleSelection<String> sources

diseaseClasses

public org.cytoscape.work.util.ListSingleSelection<String> diseaseClasses

assocTypes

public org.cytoscape.work.util.ListSingleSelection<String> assocTypes

evidenceLevels

public org.cytoscape.work.util.ListSingleSelection<String> evidenceLevels

minScoreRange

public Double minScoreRange

maxScoreRange

public Double maxScoreRange

Constructor Detail

ExpandNewNetworkTask

public ExpandNewNetworkTask(org.cytoscape.view.model.CyNetworkView cyNetworkView,
                            org.cytoscape.view.model.View<org.cytoscape.model.CyNode> cyNodeView)

Method Detail

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Specified by:

run in class org.cytoscape.work.AbstractTask

Throws:

Exception

getNetType

public String getNetType()

setNetType

public void setNetType(String netType)

getNetName

public String getNetName()

setNetName

public void setNetName(String netName)