es.imim.DisGeNET.internal.annotation

Class AnnotateVariantsTask

java.lang.Object

org.cytoscape.work.AbstractTask

es.imim.DisGeNET.internal.annotation.AnnotateVariantsTask

All Implemented Interfaces:

org.cytoscape.work.Task

public class AnnotateVariantsTask
extends org.cytoscape.work.AbstractTask

Field Summary

Fields

Modifier and Type	Field and Description
org.cytoscape.work.util.ListSingleSelection<String>	assocTypes
org.cytoscape.work.util.ListSingleSelection<Callable<org.cytoscape.model.CyColumn>>	columnNames
org.cytoscape.work.util.ListSingleSelection<String>	diseaseClasses
org.cytoscape.work.util.ListSingleSelection<String>	evidenceLevels
Double	maxScoreRange
Double	minScoreRange
org.cytoscape.work.util.ListSingleSelection<String>	sources

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
AnnotateVariantsTask(org.cytoscape.view.model.CyNetworkView cyNetworkView, String source)

Method Summary

Modifier and Type	Method and Description
String	buildSearchField()
void	run(org.cytoscape.work.TaskMonitor taskMonitor)

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, getTaskIterator, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

columnNames

public org.cytoscape.work.util.ListSingleSelection<Callable<org.cytoscape.model.CyColumn>> columnNames

sources

public org.cytoscape.work.util.ListSingleSelection<String> sources

diseaseClasses

public org.cytoscape.work.util.ListSingleSelection<String> diseaseClasses

assocTypes

public org.cytoscape.work.util.ListSingleSelection<String> assocTypes

evidenceLevels

public org.cytoscape.work.util.ListSingleSelection<String> evidenceLevels

minScoreRange

public Double minScoreRange

maxScoreRange

public Double maxScoreRange

Constructor Detail

AnnotateVariantsTask

public AnnotateVariantsTask(org.cytoscape.view.model.CyNetworkView cyNetworkView,
                            String source)

Method Detail

buildSearchField

public String buildSearchField()
                        throws DisGeNetException

Throws:

DisGeNetException

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Specified by:

run in class org.cytoscape.work.AbstractTask

Throws:

Exception