Cytoscape App Store - Alexander Pico

Apps

	BridgeDb
	Performs ID mapping using BridgeDb and other public or custom database sources.

	BridgeDb
	Performs ID mapping using BridgeDb and other public or custom database sources.
	(20) 17917 downloads

	enhancedGraphics
	A passthrough mapper for charts and gradients

	enhancedGraphics
	A passthrough mapper for charts and gradients
	(11) 146089 downloads

	GPML-Plugin
	Enables import of GPML file via import menu.

	GPML-Plugin
	Enables import of GPML file via import menu.
	(10)

	Largest Subnetwork
	Selects the largest connected component in a network

	Largest Subnetwork
	Selects the largest connected component in a network
	(4) 7413 downloads

	Mosaic
	Systematically partition the given graph, and layout and color nodes based on GO terms.

	Mosaic
	Systematically partition the given graph, and layout and color nodes based on GO terms.
	(19)

	PathExplorer
	Finds paths, filters them based on node and edge attributes and saves them.

	PathExplorer
	Finds paths, filters them based on node and edge attributes and saves them.
	(41) 14274 downloads

	scNetViz
	Single-cell RNASeq analysis in Cytoscape

	scNetViz
	Single-cell RNASeq analysis in Cytoscape
	(1) 10147 downloads

	Synapse Client
	Access your data on Synapse.org from within Cyoscape

	Synapse Client
	Access your data on Synapse.org from within Cyoscape
	(1) 5000 downloads

	WikiPathways
	WikiPathways web service client and GPML file format importer

	WikiPathways
	WikiPathways web service client and GPML file format importer
	(11) 84451 downloads

	cyChart
	An interactive tool to define filters

	cyChart
	An interactive tool to define filters
	(1) 44109 downloads

	EnrichmentTable
	Creates a new table for performing, storing and viewing functional enrichment analysis

	EnrichmentTable
	Creates a new table for performing, storing and viewing functional enrichment analysis
	(7) 11731 downloads

	ID Mapper
	A plug-in to the BridgeDB service to provide identifier lookup. Right-click on a column header to use the "Map Column" command.

	ID Mapper
	A plug-in to the BridgeDB service to provide identifier lookup. Right-click on a column header to use the "Map Column" command.
	(1) 15282 downloads

	Legend Creator
	A way to add legends of discrete and continuous mappings to your graph

	Legend Creator
	A way to add legends of discrete and continuous mappings to your graph
	(5) 24773 downloads

	NOA
	The Network Ontology Analysis plugin performs ontology overrepresentation analysis based on the network connections among annotate nodes.

	NOA
	The Network Ontology Analysis plugin performs ontology overrepresentation analysis based on the network connections among annotate nodes.
	(20)

	PSFC
	Pathway Signal Flow Calculator: Calculates pathway activity based on gene expression/metabolite abundance and pathway topology.

	PSFC
	Pathway Signal Flow Calculator: Calculates pathway activity based on gene expression/metabolite abundance and pathway topology.
	(1) 16574 downloads

	setsApp
	Save and manipulate sets of nodes and edges

	setsApp
	Save and manipulate sets of nodes and edges
	(3) 17708 downloads

	Variation
	Integrate variation and variation consequence data on biological networks.

	Variation
	Integrate variation and variation consequence data on biological networks.
	(0) 3451 downloads