es.imim.DisGeNET.internal.enrichment

Class AbstractEnrichmentTask

java.lang.Object

org.cytoscape.work.AbstractTask

es.imim.DisGeNET.internal.enrichment.AbstractEnrichmentTask

All Implemented Interfaces:

org.cytoscape.work.Task

Direct Known Subclasses:

AutomationGeneEnrichmentTask, AutomationVariantEnrichmentTask, GeneEnrichmentTask, VariantEnrichmentTask

public abstract class AbstractEnrichmentTask
extends org.cytoscape.work.AbstractTask

Field Summary

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
AbstractEnrichmentTask(org.cytoscape.view.model.CyNetworkView cyNetworkView)

Method Summary

Modifier and Type	Method and Description
HttpURLConnection	getConn()
org.cytoscape.model.CyNetwork	getCurrNetwork()
List<org.json.simple.JSONObject>	getEnrichList()
org.cytoscape.work.util.ListSingleSelection<Callable<org.cytoscape.model.CyColumn>>	listNodeColumnsNames()
void	openConnection(URL apiUrl)
void	run(org.cytoscape.work.TaskMonitor taskMonitor)
void	setUrlParams(String urlParams)

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, getTaskIterator, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractEnrichmentTask

public AbstractEnrichmentTask(org.cytoscape.view.model.CyNetworkView cyNetworkView)

Method Detail

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Specified by:

run in class org.cytoscape.work.AbstractTask

Throws:

Exception

getEnrichList

public List<org.json.simple.JSONObject> getEnrichList()

getCurrNetwork

public org.cytoscape.model.CyNetwork getCurrNetwork()

setUrlParams

public void setUrlParams(String urlParams)

listNodeColumnsNames

public org.cytoscape.work.util.ListSingleSelection<Callable<org.cytoscape.model.CyColumn>> listNodeColumnsNames()

getConn

public HttpURLConnection getConn()

openConnection

public void openConnection(URL apiUrl)
                    throws IOException

Throws:

IOException