es.imim.DisGeNET.internal.enrichment

Class GeneEnrichmentTask

java.lang.Object

org.cytoscape.work.AbstractTask

es.imim.DisGeNET.internal.enrichment.AbstractEnrichmentTask

es.imim.DisGeNET.internal.enrichment.GeneEnrichmentTask

All Implemented Interfaces:

org.cytoscape.work.Task

public class GeneEnrichmentTask
extends AbstractEnrichmentTask

Field Summary

Fields

Modifier and Type	Field and Description
org.cytoscape.work.util.ListSingleSelection<Callable<org.cytoscape.model.CyColumn>>	columnNames
Integer	minNumGenes
boolean	newNetwork
double	pvalueThreshold
org.cytoscape.work.util.ListSingleSelection<String>	sources
org.cytoscape.work.util.ListSingleSelection<String>	typeId

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
GeneEnrichmentTask(org.cytoscape.view.model.CyNetworkView cyNetworkView)

Method Summary

Modifier and Type	Method and Description
void	run(org.cytoscape.work.TaskMonitor taskMonitor)

Methods inherited from class es.imim.DisGeNET.internal.enrichment.AbstractEnrichmentTask

getConn, getCurrNetwork, getEnrichList, listNodeColumnsNames, openConnection, setUrlParams

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, getTaskIterator, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

columnNames

public org.cytoscape.work.util.ListSingleSelection<Callable<org.cytoscape.model.CyColumn>> columnNames

sources

public org.cytoscape.work.util.ListSingleSelection<String> sources

typeId

public org.cytoscape.work.util.ListSingleSelection<String> typeId

newNetwork

public boolean newNetwork

pvalueThreshold

public double pvalueThreshold

minNumGenes

public Integer minNumGenes

Constructor Detail

GeneEnrichmentTask

public GeneEnrichmentTask(org.cytoscape.view.model.CyNetworkView cyNetworkView)

Method Detail

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Overrides:

run in class AbstractEnrichmentTask

Throws:

Exception