es.imim.DisGeNET.internal.enrichment

Class VariantEnrichmentTask

java.lang.Object

org.cytoscape.work.AbstractTask

es.imim.DisGeNET.internal.enrichment.AbstractEnrichmentTask

es.imim.DisGeNET.internal.enrichment.VariantEnrichmentTask

All Implemented Interfaces:

org.cytoscape.work.Task

public class VariantEnrichmentTask
extends AbstractEnrichmentTask

Field Summary

Fields

Modifier and Type	Field and Description
org.cytoscape.work.util.ListSingleSelection<Callable<org.cytoscape.model.CyColumn>>	columnNames
Integer	minNumVariants
boolean	newNetwork
double	pvalueThreshold
org.cytoscape.work.util.ListSingleSelection<String>	sources

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
VariantEnrichmentTask(org.cytoscape.view.model.CyNetworkView cyNetworkView)

Method Summary

Modifier and Type	Method and Description
void	run(org.cytoscape.work.TaskMonitor taskMonitor)

Methods inherited from class es.imim.DisGeNET.internal.enrichment.AbstractEnrichmentTask

getConn, getCurrNetwork, getEnrichList, listNodeColumnsNames, openConnection, setUrlParams

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, getTaskIterator, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

columnNames

public org.cytoscape.work.util.ListSingleSelection<Callable<org.cytoscape.model.CyColumn>> columnNames

sources

public org.cytoscape.work.util.ListSingleSelection<String> sources

newNetwork

public boolean newNetwork

pvalueThreshold

public double pvalueThreshold

minNumVariants

public Integer minNumVariants

Constructor Detail

VariantEnrichmentTask

public VariantEnrichmentTask(org.cytoscape.view.model.CyNetworkView cyNetworkView)

Method Detail

run

public void run(org.cytoscape.work.TaskMonitor taskMonitor)
         throws Exception

Specified by:

run in interface org.cytoscape.work.Task

Overrides:

run in class AbstractEnrichmentTask

Throws:

Exception