Uses of Class
cyTransFinder.MyCytoPanel

Uses of MyCytoPanel in cyTransFinder

Fields in cyTransFinder declared as MyCytoPanel

Modifier and Type	Field and Description
protected MyCytoPanel	WebserviceTask_Uniprot.myCytoPanel
protected MyCytoPanel	WebserviceTask_UCSC.myCytoPanel
protected MyCytoPanel	WebserviceTask_TFTargetmine.myCytoPanel
protected MyCytoPanel	WebserviceTask_TargetHub.myCytoPanel
protected MyCytoPanel	WebserviceTask_motifTypeParser.myCytoPanel
protected MyCytoPanel	WebserviceTask_motifProcessing.myCytoPanel

Methods in cyTransFinder with parameters of type MyCytoPanel

Modifier and Type	Method and Description
void	Network.loadNetwork(File FILE, String EXTENSION, String FILE_MEANING, MyCytoPanel myCytoPanel)

Constructors in cyTransFinder with parameters of type MyCytoPanel

Constructor and Description
AddCytoPanelAction(org.cytoscape.application.swing.CySwingApplication desktopApp, MyCytoPanel myCytoPanel)
WebserviceTask_mirIAD_InterGenic(CyActivator CY_ACTIVATOR, Set<org.cytoscape.model.CyNode> GENE_NODES, MyCytoPanel myCytoPanel, String ENHANCE_TYPE, int ITER)
WebserviceTask_mirIAD(CyActivator CY_ACTIVATOR, Set<org.cytoscape.model.CyNode> GENE_NODES, MyCytoPanel myCytoPanel, String ENHANCE_TYPE, int ITER)
WebserviceTask_motifProcessing(CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel, String[] MYMOTIF, String IntraInterMirna)
WebserviceTask_motifTypeParser(File FILE, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel, String FULLSIMPLE)
WebserviceTask_TargetHub(Set<org.cytoscape.model.CyNode> GENE_NODES, Set<org.cytoscape.model.CyNode> MIRNA_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, boolean MATURE_STEMLOOP, boolean DBNAMES_or_SOURCESNUMBER, boolean EXACT_ATLEAST, int VALUE_EXACTATLEAST, boolean MIRANDA, boolean MIRTARBASE, boolean PICTAR, boolean TARGETSCAN, MyCytoPanel myCytoPanel, String Modality, Map<String,String> listAllTF, String temporaryActualType)
WebserviceTask_TFTargetmine(String ORGANISM, Set<org.cytoscape.model.CyNode> GENE_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel, String FUNCTION, int Iter)
WebserviceTask_UCSC(String ORGANISM, Set<org.cytoscape.model.CyNode> GENE_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel)
WebserviceTask_Uniprot(String ORGANISM, Set<org.cytoscape.model.CyNode> GENE_NODES, CyActivator CY_ACTIVATOR, org.cytoscape.view.model.CyNetworkView MYVIEW, MyCytoPanel myCytoPanel)