Submit an App
Submit a 3.0 App
Guide to 3.0 App Development
Sign In
All Apps
Categories
collections
(4)
data visualization
(75)
network generation
(59)
graph analysis
(57)
network analysis
(56)
online data import
(46)
automation
(43)
integrated analysis
(39)
clustering
(36)
systems biology
(32)
utility
(31)
enrichment analysis
(29)
visualization
(28)
data integration
(28)
layout
(21)
core app
(21)
annotation
(21)
ontology analysis
(18)
pathway database
(17)
network comparison
(17)
local data import
(17)
import
(17)
gene expression
(16)
functional analysis
(16)
scripting
(13)
interaction database
(13)
PPI-network
(12)
GO annotation
(12)
regulatory networks
(11)
Network structure
(11)
network dynamics
(11)
network inference
(10)
Topology
(9)
heat map visualization
(9)
export
(9)
network manipulation
(8)
gene regulation
(8)
functional module detection
(8)
disease
(8)
cancer data analysis
(8)
attribute generation
(8)
animation
(8)
networks
(7)
linked data
(7)
ID mapping
(7)
gene-disease association
(7)
database
(7)
centrality analysis
(7)
simulation
(6)
Random walk with restart algorithm
(6)
pathway
(6)
network partitioning
(6)
network learning
(6)
molecular structure
(6)
microarrays
(6)
grouping
(6)
social network analysis
(5)
sequence similarity
(5)
R
(5)
Protein complex
(5)
Pathway finding
(5)
network alignment
(5)
literature mining
(5)
Gene prioritization
(5)
data manipulation
(5)
Connection sub-graph discovery
(5)
structural biology
(4)
SPARQL
(4)
signaling
(4)
set analysis
(4)
kegg
(4)
JavaScript
(4)
gene function prediction
(4)
gene co-expression
(4)
disease-disease association
(4)
cluster visualization
(4)
variant analysis
(3)
shortest paths
(3)
set visualization
(3)
search
(3)
SBML
(3)
network repository
(3)
inference
(3)
genome visualization
(3)
bayesian networks
(3)
Topology
Search for posts about Topology →
Ask a question about Topology →
Adj Exporter
Cytoscape app that enables AdjacencyMatrixExport formats for directed & undirected networks
Adj Exporter
Cytoscape app that enables AdjacencyMatrixExport formats for directed & undirected networks
(12) 7087 downloads
CyIsomorphism
All possible subgraph isomorphisms
CyIsomorphism
All possible subgraph isomorphisms
(4) 2717 downloads
Diffusion
Expand node selection using network propagation algorithms
Diffusion
Expand node selection using network propagation algorithms
(35) 11413 downloads
MCDS
Approximates the minimum connected dominating set (MCDS) of directed networks.
MCDS
Approximates the minimum connected dominating set (MCDS) of directed networks.
(13) 2929 downloads
TMM
Predict the activity of Telomere Maintenance Mechanisms from gene expression data. Contribute to improvement of TMM pathways
TMM
Predict the activity of Telomere Maintenance Mechanisms from gene expression data. Contribute to improvement of TMM pathways
(0) 3082 downloads
CountTriplets
Counts graph triplets and plots significance profiles
CountTriplets
Counts graph triplets and plots significance profiles
(0) 964 downloads
cytoHubba
Predicts and explores important nodes and subnetworks in a given network by several topological algorithms.
cytoHubba
Predicts and explores important nodes and subnetworks in a given network by several topological algorithms.
(132) 27428 downloads
IDARE [idare]
Multiomics Visualisation and Network detangling
IDARE [idare]
Multiomics Visualisation and Network detangling
(0) 933 downloads
OCSANA+
Optimal Control and Simulation of Signaling Networks from Network Analysis
OCSANA+
Optimal Control and Simulation of Signaling Networks from Network Analysis
(15) 286 downloads
Unsupported Plugins for Cytoscape 2.x
