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All Apps
Categories
network generation
(42)
online data import
(35)
graph analysis
(26)
data visualization
(25)
utility
(18)
integrated analysis
(18)
ontology analysis
(15)
clustering
(15)
scripting
(12)
layout
(12)
interaction database
(11)
enrichment analysis
(11)
local data import
(9)
pathway database
(8)
GO annotation
(7)
functional analysis
(7)
animation
(7)
network comparison
(6)
data integration
(6)
grouping
(5)
export
(5)
network manipulation
(4)
ID mapping
(4)
heat map visualization
(4)
attribute generation
(4)
sequence similarity
(3)
search
(3)
network dynamics
(3)
molecular structure
(3)
literature mining
(3)
annotation
(3)
systems biology
(2)
simulation
(2)
R
(2)
Network structure
(2)
network partitioning
(2)
network analysis
(2)
metabolite function
(2)
GPU Computing
(2)
genome visualization
(2)
gene regulation
(2)
gene function prediction
(2)
gene-disease association
(2)
functional module detection
(2)
disease
(2)
animation
annotation
attribute generation
clustering
data integration
data visualization
disease
enrichment analysis
export
functional analysis
functional module detection
gene-disease association
gene function prediction
gene regulation
genome visualization
GO annotation
GPU Computing
graph analysis
grouping
heat map visualization
ID mapping
integrated analysis
interaction database
layout
literature mining
local data import
metabolite function
molecular structure
network analysis
network comparison
network dynamics
network generation
network manipulation
network partitioning
Network structure
online data import
ontology analysis
pathway database
R
scripting
search
sequence similarity
simulation
systems biology
utility
Featured Apps
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PSICQUICUniversalClient
PSICQUIC Web Service Client for importing interactions from public databases
PSICQUICUniversalClient
PSICQUIC Web Service Client for importing interactions from public databases
(10)
ClueGO
Creates and visualizes a functionally grouped network of terms/pathways
ClueGO
Creates and visualizes a functionally grouped network of terms/pathways
(27) 2517 downloads
BiNGO
Calculates overrepresented GO terms in the network and display them as a network of significant GO terms.
BiNGO
Calculates overrepresented GO terms in the network and display them as a network of significant GO terms.
(10)
DynNetwork
Visualize dynamic networks in Cytoscape 3.0
DynNetwork
Visualize dynamic networks in Cytoscape 3.0
(7) 1395 downloads
Top Voted Apps
GeneMANIA
Imports interaction networks from public databases from a list of genes with their annotations and putative functions.
GeneMANIA
Imports interaction networks from public databases from a list of genes with their annotations and putative functions.
(35) 1960 downloads
PathExplorer
Finds paths, filters them based on node and edge attributes and saves them.
PathExplorer
Finds paths, filters them based on node and edge attributes and saves them.
(26) 991 downloads
ClueGO
Creates and visualizes a functionally grouped network of terms/pathways
ClueGO
Creates and visualizes a functionally grouped network of terms/pathways
(27) 2517 downloads
ClusterONE
Finds overlapping protein complexes in a protein interaction network.
ClusterONE
Finds overlapping protein complexes in a protein interaction network.
(17) 809 downloads
Top Downloaded Apps
ClueGO
Creates and visualizes a functionally grouped network of terms/pathways
ClueGO
Creates and visualizes a functionally grouped network of terms/pathways
(27) 2517 downloads
jActiveModules
Finds clusters where member nodes show significant changes in expression levels.
jActiveModules
Finds clusters where member nodes show significant changes in expression levels.
(9) 1670 downloads
GeneMANIA
Imports interaction networks from public databases from a list of genes with their annotations and putative functions.
GeneMANIA
Imports interaction networks from public databases from a list of genes with their annotations and putative functions.
(35) 1960 downloads
MCODE
Clusters a given network based on topology to find densely connected regions.
MCODE
Clusters a given network based on topology to find densely connected regions.
(3) 1544 downloads