Uses of Class
idare.sbmlannotator.internal.gpr.Protein

Packages that use Protein

Package	Description
idare.sbmlannotator.internal.gpr

Uses of Protein in idare.sbmlannotator.internal.gpr

Methods in idare.sbmlannotator.internal.gpr that return Protein

Modifier and Type	Method and Description
Protein	GPRManager.getProtein(GPRAssociation assoc)
Protein	GPRManager.getProtein(HashMap<String,String> databaseids)
Protein	GPRManager.getProtein(String Proteinname)
Protein	GPRManager.getSingleGeneProtein(Gene g)
Protein	GPRManager.getUnassociatedProtein(String name)

Methods in idare.sbmlannotator.internal.gpr that return types with arguments of type Protein

Modifier and Type	Method and Description
Set<Protein>	GPRAssociation.getProteins()
Set<Protein>	GPRManager.getProteins(Collection<GPRAssociation> assocs)

Methods in idare.sbmlannotator.internal.gpr with parameters of type Protein

Modifier and Type	Method and Description
void	GPRAssociation.addGenesByProtein(Protein prot, Set<Gene> genes)
GPRAssociation	GPRManager.associateGenesToProtein(Protein p, Set<Gene> genes)
GPRAssociation	GPRManager.getGPRAssoc(Protein p)
Set<Gene>	GPRManager.getProteinBuildingGenes(Protein p)
void	GPRManager.updateProteindbs(Protein p, HashMap<String,String> databaseids)

Constructor parameters in idare.sbmlannotator.internal.gpr with type arguments of type Protein

Constructor and Description
FBCGPRParser(Association assoc, Model model, HashMap<SBase,Gene> genes, HashMap<SBase,Protein> proteins, HashMap<String,SBase> productids)