Uses of Class
idare.sbmlannotator.internal.gpr.Gene

Packages that use Gene

Package	Description
idare.sbmlannotator.internal.gpr

Uses of Gene in idare.sbmlannotator.internal.gpr

Methods in idare.sbmlannotator.internal.gpr that return Gene

Modifier and Type	Method and Description
Gene	GPRManager.getGene(HashMap<String,String> databaseids)
Gene	GPRManager.getGene(String genename)
Gene	GPRManager.getUnassociatedGene(String name)

Methods in idare.sbmlannotator.internal.gpr that return types with arguments of type Gene

Modifier and Type	Method and Description
Set<Gene>	Protein.getCodingGenes()
Set<Gene>	GPRAssociation.getGenes()
Set<Gene>	GPRAssociation.getGenesWithoutProteins()
Set<Gene>	GPRManager.getProteinBuildingGenes(Protein p)

Methods in idare.sbmlannotator.internal.gpr with parameters of type Gene

Modifier and Type	Method and Description
void	GPRAssociation.addGene(Gene g)
Protein	GPRManager.getSingleGeneProtein(Gene g)
void	GPRManager.updateGenedbs(Gene g, HashMap<String,String> databaseids)

Method parameters in idare.sbmlannotator.internal.gpr with type arguments of type Gene

Modifier and Type	Method and Description
void	GPRAssociation.addAllGenes(Set<Gene> g)
void	GPRAssociation.addGenesByProtein(Protein prot, Set<Gene> genes)
GPRAssociation	GPRManager.associateGenesToProtein(Protein p, Set<Gene> genes)
GPRAssociation	Protein.setCodingGenes(Set<Gene> genes, GPRManager gm)

Constructor parameters in idare.sbmlannotator.internal.gpr with type arguments of type Gene

Constructor and Description
FBCGPRParser(Association assoc, Model model, HashMap<SBase,Gene> genes, HashMap<SBase,Protein> proteins, HashMap<String,SBase> productids)