Uses of Class
idare.imagenode.internal.IDAREImageNodeApp

Packages that use IDAREImageNodeApp

Package	Description
idare.imagenode	This package contains the Service of the IDAREApp that allows the addition of plugins to the app.
idare.imagenode.internal.DataManagement
idare.imagenode.internal.GUI.DataSetController
idare.imagenode.internal.Layout.Manual
idare.internal	This package contains the basic app object that is available to all parts of the app.
idare.sbmlannotator.internal
idare.sbmlannotator.internal.Tasks

Uses of IDAREImageNodeApp in idare.imagenode

Constructors in idare.imagenode with parameters of type IDAREImageNodeApp

Constructor and Description
IDAREImageNodeAppService(IDAREImageNodeApp app) Default constructor obtaining an IDAREImageNodeApp.

Uses of IDAREImageNodeApp in idare.imagenode.internal.DataManagement

Methods in idare.imagenode.internal.DataManagement with parameters of type IDAREImageNodeApp

Modifier and Type	Method and Description
void	NodeManager.handleEvent(org.cytoscape.session.events.SessionAboutToBeSavedEvent arg0, IDAREImageNodeApp app) Handle a SessionAboutToBeSavedEvent.
void	NodeManager.handleEvent(org.cytoscape.session.events.SessionLoadedEvent arg0, IDAREImageNodeApp app) Restore the data of this nodemanager.
void	NodeManager.readNodeLayouts(File LayoutFile, IDAREImageNodeApp app) Read Layout data saved in a given File to restore old nodemanager data.
void	NodeManager.writeNodeLayouts(File LayoutFile, IDAREImageNodeApp app) Write a structure that can be read again by a nodemanager to restore the current state of the manager.

Uses of IDAREImageNodeApp in idare.imagenode.internal.GUI.DataSetController

Constructors in idare.imagenode.internal.GUI.DataSetController with parameters of type IDAREImageNodeApp

Constructor and Description
DataSetControlPanel(org.cytoscape.application.swing.CySwingApplication cySwingApp, IDAREImageNodeApp app) The Constructor for a DataSetControlPanel.

Uses of IDAREImageNodeApp in idare.imagenode.internal.Layout.Manual

Methods in idare.imagenode.internal.Layout.Manual with parameters of type IDAREImageNodeApp

Modifier and Type	Method and Description
static void	LayoutGUI.createAndShowGUI(DataSetSelectionModel dssm, DataSetManager dsm, IDAREImageNodeApp app, CreateNodesTaskFactory nodeFactory) Build the gui

Constructors in idare.imagenode.internal.Layout.Manual with parameters of type IDAREImageNodeApp

Constructor and Description
LayoutGUI(DataSetManager dsm, IDAREImageNodeApp app, CreateNodesTaskFactory nodeFactory)

Uses of IDAREImageNodeApp in idare.internal

Methods in idare.internal that return IDAREImageNodeApp

Modifier and Type	Method and Description
IDAREImageNodeApp	IDAREApp.getImageNodeApp() Since the IDAREImageNodeApp provides a couple of services itself, this function allows to obtain the used copy

Methods in idare.internal with parameters of type IDAREImageNodeApp

Modifier and Type	Method and Description
void	IDAREApp.setImageApp(IDAREImageNodeApp app) Set the IDAREImageNodeApp object used in this app.

Uses of IDAREImageNodeApp in idare.sbmlannotator.internal

Constructors in idare.sbmlannotator.internal with parameters of type IDAREImageNodeApp

Constructor and Description
SBMLAnnotaterTask(org.cytoscape.application.CyApplicationManager cymanager, SBMLDocument SBMLDoc, boolean GenerateGeneNodes, org.cytoscape.event.CyEventHelper eventHelper, String GeneAnnotDB, String ProtAnnotDB, Map<String,Set<CVTerm>> ProtAnnot, String sbmlTypeCol, String sbmlIDCol, String sbmlCompCol, String SBMLInteractionCol, IDAREImageNodeApp app) A Task reading in an SBML File and parsing its Notes fields adding the information to the Nodes of the current network.
SBMLAnnotationTaskFactory(org.cytoscape.application.CyApplicationManager applicationManager, org.cytoscape.event.CyEventHelper eventHelper, org.cytoscape.util.swing.FileUtil fileutil, org.cytoscape.application.swing.CySwingApplication cySwingApp, SBMLManagerHolder SBMLListener, IDAREImageNodeApp app)

Uses of IDAREImageNodeApp in idare.sbmlannotator.internal.Tasks

Constructors in idare.sbmlannotator.internal.Tasks with parameters of type IDAREImageNodeApp

Constructor and Description
SBMLAnnotatorTaskFactory(org.cytoscape.service.util.CyServiceRegistrar reg, SBMLManagerHolder SBMLListener, IDAREImageNodeApp app)