idare.imagenode.internal.VisualStyle

Class IDAREVisualStyle

java.lang.Object

idare.imagenode.internal.VisualStyle.IDAREVisualStyle

All Implemented Interfaces:

GraphicsChangedListener, org.cytoscape.event.CyListener, org.cytoscape.session.events.SessionLoadedListener

public class IDAREVisualStyle
extends Object
implements org.cytoscape.session.events.SessionLoadedListener, GraphicsChangedListener

A Visual Style using information from the IDARE columns (defined in IDAREProperties) for better visibility of the networks.

Author:

Thomas Pfau

Field Summary

Fields

Modifier and Type	Field and Description
static String	IDARE_STYLE_TITLE

Constructor Summary

Constructors

Constructor and Description

IDAREVisualStyle(org.cytoscape.view.vizmap.VisualStyleFactory visualStyleFactoryServiceRef, org.cytoscape.view.vizmap.VisualMappingManager vmmServiceRef, org.cytoscape.view.vizmap.VisualMappingFunctionFactory vmfFactoryD, org.cytoscape.view.vizmap.VisualMappingFunctionFactory vmfFactoryP, org.cytoscape.event.CyEventHelper eventHelper, ImageStorage imf, org.cytoscape.view.model.CyNetworkViewManager cyNetViewMgr, NodeManager idm, ActiveNodeManager anm) Create a new Visual Style and Activator.

Method Summary

Modifier and Type	Method and Description
void	applyStyleToNetwork(org.cytoscape.view.model.CyNetworkView view) Apply the contained visualstyle to a given Networkview and update that view.
void	applyToAll() Check whether this style
void	handleEvent(org.cytoscape.session.events.SessionLoadedEvent arg0)
void	imageUpdated(GraphicsChangedEvent e) Update according to the updated images provided in this event.
void	reset() Reset the Visual Style to use its default properties
void	setupVisualStyle() Setup the visual Style
void	shutdown() Remove the Visualstyle from Cytoscape.
void	updateRelevantViews() Update all views, that are associated with the IDARE visualstyle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

IDARE_STYLE_TITLE

public static String IDARE_STYLE_TITLE

Constructor Detail

IDAREVisualStyle

public IDAREVisualStyle(org.cytoscape.view.vizmap.VisualStyleFactory visualStyleFactoryServiceRef,
                        org.cytoscape.view.vizmap.VisualMappingManager vmmServiceRef,
                        org.cytoscape.view.vizmap.VisualMappingFunctionFactory vmfFactoryD,
                        org.cytoscape.view.vizmap.VisualMappingFunctionFactory vmfFactoryP,
                        org.cytoscape.event.CyEventHelper eventHelper,
                        ImageStorage imf,
                        org.cytoscape.view.model.CyNetworkViewManager cyNetViewMgr,
                        NodeManager idm,
                        ActiveNodeManager anm)

Create a new Visual Style and Activator.

Parameters:

visualStyleFactoryServiceRef - - Service reference for visual style

vmmServiceRef - - Visual Mapping Manager

vmfFactoryD - - Visualmapping function factory for Discrete mappings

vmfFactoryP - - Visualmapping function factory for passthrough mappings

eventHelper - - Cytoscape Event helper

imf - - The IDARE specific mapping function for images.

cyNetViewMgr - - A Cytoscape Network View Manager

idm - - The Nodemanager of IDARE

anm - - The ActiveNodeManager of IDARE

Method Detail

shutdown

public void shutdown()

Remove the Visualstyle from Cytoscape.

reset

public void reset()

Reset the Visual Style to use its default properties

setupVisualStyle

public void setupVisualStyle()

Setup the visual Style

applyStyleToNetwork

public void applyStyleToNetwork(org.cytoscape.view.model.CyNetworkView view)

Apply the contained visualstyle to a given Networkview and update that view.

Parameters:

view - the view to apply the style to

applyToAll

public void applyToAll()

Check whether this style

handleEvent

public void handleEvent(org.cytoscape.session.events.SessionLoadedEvent arg0)

Specified by:

handleEvent in interface org.cytoscape.session.events.SessionLoadedListener

updateRelevantViews

public void updateRelevantViews()

Update all views, that are associated with the IDARE visualstyle

imageUpdated

public void imageUpdated(GraphicsChangedEvent e)

Description copied from interface: GraphicsChangedListener

Update according to the updated images provided in this event.

Specified by:

imageUpdated in interface GraphicsChangedListener

Parameters:

e - the GraphicsChangedEvent to process