idare.imagenode.internal.ImageManagement

Class ImageStorage

java.lang.Object

idare.imagenode.internal.ImageManagement.ImageStorage

All Implemented Interfaces:

NodeChangedListener, org.cytoscape.view.presentation.customgraphics.CyCustomGraphicsFactory, org.cytoscape.view.vizmap.mappings.DiscreteMapping<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>, org.cytoscape.view.vizmap.VisualMappingFunction<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>

public class ImageStorage
extends Object
implements org.cytoscape.view.presentation.customgraphics.CyCustomGraphicsFactory, org.cytoscape.view.vizmap.VisualMappingFunction<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>, org.cytoscape.view.vizmap.mappings.DiscreteMapping<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>, NodeChangedListener

The ImageStorage functions as both CyCustomGraphicsFactory and management for images used by IDARE. In addition it provides the mapping function between Strings and the respective IDARE images.

Author:

Thomas Pfau

Field Summary

Fields inherited from interface org.cytoscape.view.vizmap.mappings.DiscreteMapping

DISCRETE

Constructor Summary

Constructors

Constructor and Description
ImageStorage(org.cytoscape.view.model.VisualProperty<org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>> VisualcustomGraphiVP) Default Constructor defining the VisualProperty that this VisualMappingFunction maps to.

Method Summary

Modifier and Type	Method and Description
void	addImageLayoutChangedListener(GraphicsChangedListener listener) Add a listener that listens to changed images (and updates accordingly)
void	apply(org.cytoscape.model.CyRow arg0, org.cytoscape.view.model.View arg1)
void	generateGraphicsForID(String ID, boolean Setup) Get the Graphic for the respective ID
void	generateGraphicsForIDs(Collection<String> IDs) Generate the Graphics for the respective IDs
Map<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>	getAll()
BufferedImage	getimagenodeImageForItem(String ID) Get the BufferedImage associated with a specific ID The Image will be generated if necessar (and possible)
IDARECustomGraphics	getInstance(String input)
IDARECustomGraphics	getInstance(URL url)
org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>	getMappedValue(org.cytoscape.model.CyRow arg0)
String	getMappingColumnName()
Class<String>	getMappingColumnType()
org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>	getMapValue(String arg0)
String	getPrefix()
Class<? extends org.cytoscape.view.presentation.customgraphics.CyCustomGraphics>	getSupportedClass()
org.cytoscape.view.model.VisualProperty	getVisualProperty()
void	handleNodeUpdate(NodeUpdateEvent e) Handle a NodeUpdateEvent, that informs that certain nodes were updated.
void	invalidate(Collection<String> ids) Invalidate all Images associated with the provided Strings.
void	invalidate(String id) Invalidate a specific ID (i.e.
org.cytoscape.view.presentation.customgraphics.CyCustomGraphics	parseSerializableString(String string)
<T extends org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>> void	putAll(Map<String,T> arg0)
<T extends org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>> void	putMapValue(String arg0, T arg1)
void	reset() Reset the images available in this mapping
void	setHeight(int height) Set the height of the graphics created by this factory
void	setNodeManager(NodeManager nm) Set the NodeManager linked to this ImageStorage
void	setVisualStyle(IDAREVisualStyle ids) set the IDAREVisualStyle linked to this ImageStorage
void	setWidth(int width) Set the width of the graphics created by this factory
boolean	supportsMime(String mimeType)
void	updateStyle() Update all views using the visualstyle set for this Storage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ImageStorage

public ImageStorage(org.cytoscape.view.model.VisualProperty<org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>> VisualcustomGraphiVP)

Default Constructor defining the VisualProperty that this VisualMappingFunction maps to.

Parameters:

VisualcustomGraphiVP - The VisualProperty to use

Method Detail

setVisualStyle

public void setVisualStyle(IDAREVisualStyle ids)

set the IDAREVisualStyle linked to this ImageStorage

Parameters:

ids - the IDAREVisualStyle to use

setNodeManager

public void setNodeManager(NodeManager nm)

Set the NodeManager linked to this ImageStorage

Parameters:

nm - The NodeManager to use

addImageLayoutChangedListener

public void addImageLayoutChangedListener(GraphicsChangedListener listener)

Add a listener that listens to changed images (and updates accordingly)

Parameters:

listener - the listener to add

reset

public void reset()

Reset the images available in this mapping

invalidate

public void invalidate(String id)

Invalidate a specific ID (i.e. remove the ID from the mapping).

Parameters:

id - The id to invalidate and remove the image the associated image.

invalidate

public void invalidate(Collection<String> ids)

Invalidate all Images associated with the provided Strings.

Parameters:

ids - The IDs of the nodes for which to invalidate/remove the associated images.

getimagenodeImageForItem

public BufferedImage getimagenodeImageForItem(String ID)

Get the BufferedImage associated with a specific ID The Image will be generated if necessar (and possible)

Parameters:

ID - The ID of node an image is requested for

Returns:

The requested image, or null if it does not exists, and cannot be generated.

generateGraphicsForIDs

public void generateGraphicsForIDs(Collection<String> IDs)

Generate the Graphics for the respective IDs

Parameters:

IDs - - The IDs of the Nodes

generateGraphicsForID

public void generateGraphicsForID(String ID,
                                  boolean Setup)

Get the Graphic for the respective ID

Parameters:

ID - - The ID of the Node

Setup - - Whether this is an initial setup or a general update

getPrefix

public String getPrefix()

Specified by:

getPrefix in interface org.cytoscape.view.presentation.customgraphics.CyCustomGraphicsFactory

supportsMime

public boolean supportsMime(String mimeType)

Specified by:

supportsMime in interface org.cytoscape.view.presentation.customgraphics.CyCustomGraphicsFactory

getInstance

public IDARECustomGraphics getInstance(URL url)

Specified by:

getInstance in interface org.cytoscape.view.presentation.customgraphics.CyCustomGraphicsFactory

getInstance

public IDARECustomGraphics getInstance(String input)

Specified by:

getInstance in interface org.cytoscape.view.presentation.customgraphics.CyCustomGraphicsFactory

parseSerializableString

public org.cytoscape.view.presentation.customgraphics.CyCustomGraphics parseSerializableString(String string)

Specified by:

parseSerializableString in interface org.cytoscape.view.presentation.customgraphics.CyCustomGraphicsFactory

getSupportedClass

public Class<? extends org.cytoscape.view.presentation.customgraphics.CyCustomGraphics> getSupportedClass()

Specified by:

getSupportedClass in interface org.cytoscape.view.presentation.customgraphics.CyCustomGraphicsFactory

setWidth

public void setWidth(int width)

Set the width of the graphics created by this factory

Parameters:

width - - the width to be used

setHeight

public void setHeight(int height)

Set the height of the graphics created by this factory

Parameters:

height - - the height to be used

updateStyle

public void updateStyle()

Update all views using the visualstyle set for this Storage

apply

public void apply(org.cytoscape.model.CyRow arg0,
                  org.cytoscape.view.model.View arg1)

Specified by:

apply in interface org.cytoscape.view.vizmap.VisualMappingFunction<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>

getMappedValue

public org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer> getMappedValue(org.cytoscape.model.CyRow arg0)

Specified by:

getMappedValue in interface org.cytoscape.view.vizmap.VisualMappingFunction<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>

getMappingColumnName

public String getMappingColumnName()

Specified by:

getMappingColumnName in interface org.cytoscape.view.vizmap.VisualMappingFunction<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>

getMappingColumnType

public Class<String> getMappingColumnType()

Specified by:

getMappingColumnType in interface org.cytoscape.view.vizmap.VisualMappingFunction<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>

getVisualProperty

public org.cytoscape.view.model.VisualProperty getVisualProperty()

Specified by:

getVisualProperty in interface org.cytoscape.view.vizmap.VisualMappingFunction<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>

getAll

public Map<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>> getAll()

Specified by:

getAll in interface org.cytoscape.view.vizmap.mappings.DiscreteMapping<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>

getMapValue

public org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer> getMapValue(String arg0)

Specified by:

getMapValue in interface org.cytoscape.view.vizmap.mappings.DiscreteMapping<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>

putAll

public <T extends org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>> void putAll(Map<String,T> arg0)

Specified by:

putAll in interface org.cytoscape.view.vizmap.mappings.DiscreteMapping<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>

putMapValue

public <T extends org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>> void putMapValue(String arg0,
                                                                                                                                                                       T arg1)

Specified by:

putMapValue in interface org.cytoscape.view.vizmap.mappings.DiscreteMapping<String,org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer>>

handleNodeUpdate

public void handleNodeUpdate(NodeUpdateEvent e)

Description copied from interface: NodeChangedListener

Handle a NodeUpdateEvent, that informs that certain nodes were updated.

Specified by:

handleNodeUpdate in interface NodeChangedListener

Parameters:

e - The NodeUpdateEvent to handle.