Uses of Class
idare.imagenode.internal.Services.JSBML.SBMLDocument

Packages that use SBMLDocument

Package	Description
idare.imagenode.internal.Services.JSBML
idare.sbmlannotator.internal
idare.sbmlannotator.internal.Tasks

Uses of SBMLDocument in idare.imagenode.internal.Services.JSBML

Methods in idare.imagenode.internal.Services.JSBML that return SBMLDocument

Modifier and Type	Method and Description
SBMLDocument	SBMLManagerHolder.readSBML(org.cytoscape.model.CyNetwork network)

Uses of SBMLDocument in idare.sbmlannotator.internal

Constructors in idare.sbmlannotator.internal with parameters of type SBMLDocument

Constructor and Description

SBMLAnnotaterTask(org.cytoscape.application.CyApplicationManager cymanager, SBMLDocument SBMLDoc, boolean GenerateGeneNodes, org.cytoscape.event.CyEventHelper eventHelper, String GeneAnnotDB, String ProtAnnotDB, Map<String,Set<CVTerm>> ProtAnnot, String sbmlTypeCol, String sbmlIDCol, String sbmlCompCol, String SBMLInteractionCol, IDAREImageNodeApp app) A Task reading in an SBML File and parsing its Notes fields adding the information to the Nodes of the current network.

Uses of SBMLDocument in idare.sbmlannotator.internal.Tasks

Fields in idare.sbmlannotator.internal.Tasks declared as SBMLDocument

Modifier and Type	Field and Description
SBMLDocument	SBMLAnnotatorTask.doc

Constructors in idare.sbmlannotator.internal.Tasks with parameters of type SBMLDocument

Constructor and Description
SBMLAnnotatorTask(SBMLManagerHolder holder, org.cytoscape.model.CyNetwork network, org.cytoscape.view.model.CyNetworkView networkView, IDARESettingsManager ism, org.cytoscape.service.util.CyServiceRegistrar reg, SBMLDocument doc)
SBMLAnnotatorTaskFBC(SBMLManagerHolder holder, org.cytoscape.model.CyNetwork network, org.cytoscape.view.model.CyNetworkView networkView, IDARESettingsManager ism, org.cytoscape.service.util.CyServiceRegistrar reg, SBMLDocument doc)