idare.sbmlannotator.internal.Tasks

Class SBMLAnnotatorTaskFBC

java.lang.Object

org.cytoscape.work.AbstractTask

idare.sbmlannotator.internal.Tasks.SBMLAnnotatorTask

idare.sbmlannotator.internal.Tasks.SBMLAnnotatorTaskFBC

All Implemented Interfaces:

org.cytoscape.work.swing.RequestsUIHelper, org.cytoscape.work.Task

public class SBMLAnnotatorTaskFBC
extends SBMLAnnotatorTask

Field Summary

Fields

Modifier and Type	Field and Description
boolean	removeFBCNodes

Fields inherited from class idare.sbmlannotator.internal.Tasks.SBMLAnnotatorTask

doc, geneAnnotationDataBase, generateGeneNodes, proteinAnnotationDataBase, sbmlidcolsel, sbmltypecolsel

Fields inherited from class org.cytoscape.work.AbstractTask

cancelled

Constructor Summary

Constructors

Constructor and Description
SBMLAnnotatorTaskFBC(SBMLManagerHolder holder, org.cytoscape.model.CyNetwork network, org.cytoscape.view.model.CyNetworkView networkView, IDARESettingsManager ism, org.cytoscape.service.util.CyServiceRegistrar reg, SBMLDocument doc)

Method Summary

Methods inherited from class idare.sbmlannotator.internal.Tasks.SBMLAnnotatorTask

addCobraInformationAnnotation, GetYPosition, run, setUIHelper, setupSBMLObjectIDs

Methods inherited from class org.cytoscape.work.AbstractTask

cancel, insertTasksAfterCurrentTask, insertTasksAfterCurrentTask, setTaskIterator

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

removeFBCNodes

public boolean removeFBCNodes

Constructor Detail

SBMLAnnotatorTaskFBC

public SBMLAnnotatorTaskFBC(SBMLManagerHolder holder,
                            org.cytoscape.model.CyNetwork network,
                            org.cytoscape.view.model.CyNetworkView networkView,
                            IDARESettingsManager ism,
                            org.cytoscape.service.util.CyServiceRegistrar reg,
                            SBMLDocument doc)