This collection of apps has been made to facilitate the analysis of mass spectrometry data. By installing this app, you are installing the following set of apps that work well together in workflows like this:

Network Augmentation

After loading your binary interactions from mass spec, you can load additional interaction data using the following apps in this collection:

• STRING app

ID Mapping and Annotation

• Use built-in ID mapping via right-click on column header (if needed)

Perform Analyses

• Cluster analysis with clusterMaker2
• Functional enrichment with BiNGO, EnrichmentMap, or ENViz

Resources to Help with Functional Interpretation

• WikiPathways and ReactomeFI for pathway models
• CyTargetLinker for adding miRNA, TF and drug interactions
• CyAnimator to animate across time points or comparisons (if relevant)

Refer to the documentation and app store pages for each individual app for more details