CyNeo4j allows users to connect to a Neo4j server to use the server as a storage for large graphs, a calculation platform through plugins in Neo4j or query the graph with Cypher.
This app is (at least) compatible with with Neo4j 3(.5.x), and now includes shortest path calculations for metabolic conversions based on data from WikiPathways, Reactome and LIPID MAPS (graph.db database can be downloaded [here](https://doi.org/10.5281/zenodo.7113243)).
Minimum System Requirements (for CyNeo4j 2.x):
- Neo4j 3.5.x (requires Java 8 but can run with Java 11 as well)
- Cytoscape 3.9.x (automatically comes with a Java 11 download)
Previous versions of this app were developed as part of the Google Summer of Code Program (2014).