BiNoM is a Cytoscape plugin, developed to facilitate the manipulation of biological networks represented in standard systems biology formats and to carry out studies on the network structure. <ul><li>Import of BioPAX 3, SBML and CellDesigner formats<li>Export to BioPAX 3, SBML and CellDesigner formats after user manipulations<li>Conversion between standards (CellDesigner->BioPAX 3, BioPAX 3 ->SBML)<li>Full support of BioPAX 3 information (reaction network, interaction network, pathway structure, references), concept of BioPAX 3 index and network interfaces<li>Browsing, editing, extracting parts, merging BioPAX 3 files with network graph interface<li>Structural analysis of the networks (strongly connected components, path and cycle analysis, network clustering, etc.)<li>Support of generating network modular view<li>BioPAX 3 network query system: allows to work with huge BioPAX files (such as whole Reactome or NetPath)<li>Some general purpose utilities not yet implemented in Cytoscape (clipboard operations, network updating, etc.) </ul>
