BiNoM is a Cytoscape plugin, developed to facilitate the manipulation of biological networks represented in standard systems biology formats and to carry out studies on the network structure.

• Import of BioPAX 3, SBML and CellDesigner formats
• Export to BioPAX 3, SBML and CellDesigner formats after user manipulations
• Conversion between standards (CellDesigner->BioPAX 3, BioPAX 3 ->SBML)
• Full support of BioPAX 3 information (reaction network, interaction network, pathway structure, references), concept of BioPAX 3 index and network interfaces
• Browsing, editing, extracting parts, merging BioPAX 3 files with network graph interface
• Structural analysis of the networks (strongly connected components, path and cycle analysis, network clustering, etc.)
• Support of generating network modular view
• BioPAX 3 network query system: allows to work with huge BioPAX files (such as whole Reactome or NetPath)
• Some general purpose utilities not yet implemented in Cytoscape (clipboard operations, network updating, etc.)

• Eric Bonnet (Institut Curie)
• Laurence Calzone (Institut Curie)
• Daniel Rovera (Institut Curie)
• Emmanuel Barillot (Institut Curie)
• Eric Viara (Institut Curie)
• Andrei Zinovyev (Institut Curie)