Enumerate all instances of a motif in a graph, making optimal use of the motif's symmetries.

A Protein Short Linear Motif Analysis Plugin for Cytoscape

Counts graph triplets and plots significance profiles

Predicts and explores important nodes and subnetworks in a given network by several topological algorithms.

Regulatory Network Enhancing Plugin - ReNE allows users to enhance standard KEGG/Reactome pathways wit

It allows the user to do "Network Motif Discovery" in a fast and friendly way. It uses the G-Tries algorithm which is the fastest one.

Detects master regulators and cis-regulatory interactions

An enhanced Cytoscape network querying app

Co-visualisation and co-analysis of PTM and PPI data