SLiMScape

A Protein Short Linear Motif Analysis Plugin for Cytoscape

3.0.1

Works with Cytoscape 3.0

Release Notes

- Multiple SLiMProb motifs now supported. - Made SLiMProb result display more reliable. - SLiMProb OCC table is now sortable. - Cleaned up REST inputs. - Made table columns sortable. - Run IDs can only be imported from their parent program.

3.0.0

Works with Cytoscape 3.0

Release Notes

- Altered node colouration to reflect different SLiMs, rather than the overall quantity. - Node table now includes motifs incidences. - Fixed small bugs. - Network name not matches the job ID.

1.5

Works with Cytoscape 3.0

Release Notes

- Open browser option added to the Run Dialog Box - Decoupled Run ID and "Run X" options - Added SLiMBuild options to the options panel - Added species, gene and ID columns to the node table - Name changes to buttons - Default settings for "Ambiguous Motifs" and "Conservation Masking" altered

1.4

Works with Cytoscape 3.0

Release Notes

- Panel redesign for more logical input grouping. - Error handling made more useful. - "Check" button for Run IDs implemented. - GUI changes

1.3

Works with Cytoscape 3.0

Release Notes

**15-05-18** - Improved error handling - Updated to reflect appropriate SLiMProb outputs - Added help button to the results panel - UNIPROT IDs are now comma separated - SLiMProb outputs are now more useful - SLiMChance has been removed from SLiMProb (as it had no effect) - Graphs are now consistently created if a run is a success - Documentation updates

1.1

Works with Cytoscape 3.0

Release Notes

**15-03-11** - Added QSLiMFinder to the options panels - Moved results from popups to panels; with option to view full results - Improved error handling for dud Run IDs - Updated documentation - Refactored code for increased re-usability - Added auto-filling of run ID when a new run is made

1.0

Works with Cytoscape 3.0

Release Notes

**15-02-27** - Initial release (update of 2.8 variant to 3.0) - Adds Short Linear Motif search functionality to Cytoscape

CYTOSCAPE 3

Version 3.0.1

License Click here

Released 8 Jul 2015

Works with Cytoscape 3.0

Download Stats Click here

CYTOSCAPE 2

Version 1.6

Released 9 Jan 2013

Works with Cytoscape 2.8.3

Download Stats Click here